Pairwise Alignments

Query, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella sp. ANA-3

 Score =  631 bits (1627), Expect = 0.0
 Identities = 321/495 (64%), Positives = 401/495 (81%), Gaps = 3/495 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60
           M+KE+LLV E+VSNEK VP   IFEALE ALATATKK+YE ++D+RV I+R+ G+YETFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFR 60

Query: 61  RWTVVDDEH--FDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQ 118
           RW V+DD     ++P  ++ L+ A+  NP+ + GD  E++IES+ F RI  QTAKQVIVQ
Sbjct: 61  RWMVIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQ 120

Query: 119 KVREAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVG 178
           KVREAERAQVVE ++D+ GE+I+G VKK TR+SV+VDLGNNA+ +L RED+I+RE+FR G
Sbjct: 121 KVREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPG 180

Query: 179 ARVRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKI 238
            RVRALL  +R E RG QL L+RT P MLIELFR+EVPEIA+ LIEVMGA+RDPG+RAKI
Sbjct: 181 DRVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKI 240

Query: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAI 298
           AV+S D+RIDP GAC+GMRG+RVQAVS E+GGERVDIVLWD+NPAQ VINAMAPA+VA+I
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASI 300

Query: 299 IVDEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDIL 358
           IVDED H+MDIAV  ++LAQAIGR GQNVRLA+QLTGW LNVMT  D+  K Q E+  + 
Sbjct: 301 IVDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVK 360

Query: 359 RNFIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLT 418
             FI+ LDVDE+ AQVL +EGFTSLEE+AYVP+ E+L I+GFDEDIV  LR RAK  + T
Sbjct: 361 SLFINALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAIST 420

Query: 419 KAIANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEE 478
           +A+A EE L   +P+E+LLAL+G+++ LA  LA +G++T EDLAEQ IDDL++I+ + EE
Sbjct: 421 RALATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEE 480

Query: 479 RAGKLIMAAR-AHWF 492
           +AG LIMAAR   WF
Sbjct: 481 KAGALIMAARNICWF 495