Pairwise Alignments

Query, 639 a.a., ATP-dependent metalloprotease FtsH from Pseudomonas stutzeri RCH2

Subject, 632 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  488 bits (1255), Expect = e-142
 Identities = 276/578 (47%), Positives = 375/578 (64%), Gaps = 12/578 (2%)

Query: 29  SEPQT--LNYSDFLEQVKQGRVERVTVDGFVIIGK-RSEGDTFKTIRPAIQDNGLIGDLL 85
           SEP T  L+YS  L+ +  G+V+ +  D    + + + +G     +    Q+  LI    
Sbjct: 40  SEPTTVSLDYSGLLKDIADGQVQSIDYDPVQRVARVQLQGRRSAEVPLFNQNPELIETAR 99

Query: 86  DNNVLIEGKQPEQQSIWTQLLVASFPILVIIAVFMFFMRQMQGGAGGKGGPMSFGKSKAR 145
             NV  E    +  S     LV    IL++I   +F +R+    AG     ++FGKS+AR
Sbjct: 100 RYNVPFEVTPTQDNSALAGTLVNLGLILILIVGLVFLLRR---SAGAANQALNFGKSRAR 156

Query: 146 LLSEDQVKTTFADVAGCDEAKEEVHELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKTL 205
              E +    F DVAG +EAKEE+ E+V FLR   +F  +G RIPRGVL+VGPPGTGKTL
Sbjct: 157 FQMEAKTGVMFEDVAGIEEAKEELQEVVSFLRSSDRFTAVGARIPRGVLLVGPPGTGKTL 216

Query: 206 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHR 265
           LAKAIAGEA VPFF++SGS+FVEMFVGVGASRVRD+F +AK+++PCI+FIDEIDAVGR R
Sbjct: 217 LAKAIAGEAGVPFFSMSGSEFVEMFVGVGASRVRDLFRKAKENSPCIVFIDEIDAVGRQR 276

Query: 266 GAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 325
           GAG+GGG+DEREQTLNQLL EMDGFE N G+I+IAATNRPDVLD ALLRPGRFDRQ+ V 
Sbjct: 277 GAGIGGGNDEREQTLNQLLTEMDGFEENSGVIIIAATNRPDVLDSALLRPGRFDRQITVD 336

Query: 326 LPDIRGREQILKVHMRKVPISENVEPAVIARGTPGFSGADLANLVNEASLFAARSNKRIV 385
           LP   GR  IL+VH R   ++E V    IAR TPGFSGA+LANL+NEA++  AR NK  V
Sbjct: 337 LPSYNGRLGILQVHARNKKLAEEVSLEAIARRTPGFSGAELANLLNEAAILTARRNKTAV 396

Query: 386 EMREFELAKDKIMMGAERKSMVMSEKEKLNTAYHEAGHAIVGRVVPEHDPVYKVSIIPRG 445
           +  + + A D++ +G     ++ S+K++L  AYHE GHA++  ++   D + KV+IIPR 
Sbjct: 397 DETDIDDAIDRVTIGMTLSPLLDSQKKRL-IAYHEIGHALLMTLLKHSDRLDKVTIIPRS 455

Query: 446 RAL-GVTMFLPEE---DRYSLSKRALISQICSLFGGRIAEEMTLGFEGVTTGASNDIMRA 501
             + G    +P E   D    S+  L  +I    GGR AEE+  G   VT GA++DI   
Sbjct: 456 GGIGGFAKPIPNEELIDSGLYSRAWLRDRIVVALGGRAAEEVVFGDAEVTQGAASDIEMI 515

Query: 502 TQLARNMVTKWGLSEKLGPLMYAEEEGEVFLGRSAGSQHSNVSGETARLIDEEVRSIIDH 561
           T LAR M+T++G+S+ LGPL    ++GEVFLGR   S+ ++ S   A  ID ++R++I  
Sbjct: 516 TNLAREMITRYGMSD-LGPLALESDQGEVFLGRDWMSRRADYSESVAAQIDRKIRALIQT 574

Query: 562 CYGTAKQILTDNRDKLDMMAEALMKYETIDAPQIDDIM 599
           C+  A+Q+L +NR+ +D + + L+  E I+  +   I+
Sbjct: 575 CHAEARQLLLENRELMDRLVDRLIDQELIEGDEFRKIV 612