Pairwise Alignments

Query, 421 a.a., Phage integrase family. from Pseudomonas stutzeri RCH2

Subject, 459 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 63/271 (23%), Positives = 116/271 (42%), Gaps = 37/271 (13%)

Query: 9   IPFYKGLSLIVEPGHEEHLRIALANISAVTDAINRFHSSP-------------LLTEFMD 55
           + F +  S I++ G +      L+ I +V D+    HS P              + E +D
Sbjct: 170 VRFIQSYSDIMKKGLQSDTEGLLSIIDSV-DSEQSKHSEPQDHKEHKEHKESLTIDELID 228

Query: 56  TTLSRFLRENTYAGKSEHMLRARMEKLKVILT----RDNPTRRVAELDRADVQRLKDQLP 111
             ++  +    +   ++    A+++ LK I      +D P   + +L R D+  ++  L 
Sbjct: 229 NYIADKISSGEWMESTKEKKGAKLQHLKTIFEACSLKDKP---IDKLTRNDLLEVRTAL- 284

Query: 112 LLLKQNSASGSKGANLTTYYQLFNRMLDEALESKLI--TDAIKVATCSTKQAEVTKP--F 167
                    G K   +  Y Q    + + A    LI  + A+K+   + K  ++ +P   
Sbjct: 285 ------INRGLKTLTVNGYMQDIRAIFNNAEALGLIGKSPAVKL---NIKDRDIKEPKAL 335

Query: 168 LDSNLIQMLSGWPYQKYLAGTLPKVYQDAKPYRFWLLPLGLYTGARLNELCQLRVHDVIR 227
            +S +I ++  + +  +      K   +   Y  W+  +   TGARLNE+ QLR  D+ +
Sbjct: 336 TESEVIALIDYFKHGYFTEARRSKKTLEGMKYLKWVPQIAAVTGARLNEILQLRKGDIRQ 395

Query: 228 DVHGV-ELIDINDNGYNKSLKTGSSARQIPI 257
             +G+   IDIND G N  +K  SS R +P+
Sbjct: 396 SANGLCWYIDINDRGDN-VVKNKSSNRIVPL 425