Pairwise Alignments

Query, 739 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

Subject, 830 a.a., FIG003033: Helicase domain protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  133 bits (334), Expect = 4e-35
 Identities = 196/744 (26%), Positives = 299/744 (40%), Gaps = 130/744 (17%)

Query: 23  WIWTEGWTSL---RDAQERAIPALLGADQDVIIAAATAAGKTEAAFL-PILTNLLQDTEK 78
           W    GW  L   RD  +R +    G     ++   T +GKT AAF  P+L  L      
Sbjct: 18  WFAQRGWAPLPFQRDVWKRYLDGESG-----LLHTPTGSGKTLAAFGGPLLEALAARGRT 72

Query: 79  PGA---------------VLYISPLKALINDQWDRLARLCDELELPVIAWH-----GDIS 118
           P A               VL+I+PL+AL  D    L    + L L    W      GD S
Sbjct: 73  PPATAVARGRRQPQRSLQVLWITPLRALAADTARALREPVEALGLD---WQVGLRTGDAS 129

Query: 119 ASRKHRFLKSPEGILLITPESLEALFVNKGTSLAGLFANLRYLVVDELHAFIGSERGKQL 178
           A  K         +L+ TPESL  L     T  A   A LR ++VDE H  +G++RG  L
Sbjct: 130 ARDKRLARSGKLDVLVTTPESLALLLSYPDT--APQLAALRCVIVDEWHELLGNKRGVLL 187

Query: 179 QSLMHRVETIIDRPLPRV-GLSATLGDMTLAAAFLRPNAPHHVSVIESKGSGQILKAQIR 237
           Q  + R+ +    P  R+ GLSATLG++  A   L P+ P    V   K     L+  + 
Sbjct: 188 QLCLARLRSW--SPALRIWGLSATLGNLAQARDVLLPHQPDAALVSGVKPRAMTLETLL- 244

Query: 238 GYVESKKALPVQPEGDDVFS-PDHA----IAEHLFQVLRGSNNLIFPNSRTQVEWFADNL 292
                       PE  + F    H     +A  L +++    +L+F N+R Q E +   L
Sbjct: 245 ------------PETGERFPWAGHLGLAQLARVLHKLMEQRTSLVFTNTRAQAELWHQAL 292

Query: 293 RRRCEQNGVPNEFWPHHGSLAKDIREETEKALKAGDRPATAVCTTTLELGVDIGSIKTVV 352
                ++        HHGSL   +R   E  L+ G      V T++L+LGVD  ++  V+
Sbjct: 293 SAVWPEDAATLAL--HHGSLDPALRTAAEHGLRDGSLRCV-VATSSLDLGVDFPAVDQVL 349

Query: 353 QIGAPPSVASLRQRLGRSGRRPGEA---AILRSYCKERQLDDGSPLSDRLRQGLLQSIAM 409
           Q+G+P  +A L QR GR+  RPGE+     + S+  E                LL+  A 
Sbjct: 350 QVGSPKGIARLLQRAGRARHRPGESGHVVCVPSHALE----------------LLEYAAA 393

Query: 410 IRLLMQGWFE---PPRVHGLHLSTLVQQCLSVIAQRGGATAAELWSTLIRSGPFTGVEQG 466
            R + QG  E   PPR   L L  L Q C++ +A  GG  A  L   +  +  F  +++ 
Sbjct: 394 RRAIAQGQIETRPPPR---LSLDVLAQHCVT-LALGGGFQADALLREVRGTDAFATLDEA 449

Query: 467 SFLSLLRALGERDLITQETSGLL--------------LPGVVGERL-INHYDFYSAFVSN 511
           ++ ++L      D I Q  S L               +  V   R+ + H        S+
Sbjct: 450 TWQAVL------DFIVQGGSALAHYPDFHKVVRDDAGIYRVTDRRVALRHRLSIGTITSD 503

Query: 512 EEFRL-VCDGKPLGALP---VSRPLTVDQRIIFAGRRWRVTSVDTEAKVVVVRSDPGGAP 567
              R+    G  LGA+    V R L    R  FAGR   +  ++     V +     G  
Sbjct: 504 GSVRVQFLRGGRLGAVEEQFVGR-LKRGDRFQFAGRLLELVRLEDMTAYVRIAKGGSGVV 562

Query: 568 PSFDGLGARVHDRVRQEMRSVLLEADVYPYLDTTAQELLAQARSAFSDLG-----LAHSS 622
           P + G    +   + +E+ +V  +    P + T A   L Q +S+ S L      L  + 
Sbjct: 563 PKWMGGRMPLSSALGREVEAVFADPGDAPEMHTLAP--LLQLQSSLSALPGPGHLLVETI 620

Query: 623 MTESGGKTYLFSWRGDWTNDALAILLTHT---------GLASENSGFVI----EVEGDRT 669
               G   +++ + G   N+ LA LL              A+ + GFV+    +V  D  
Sbjct: 621 KARDGRHLFVYPFAGRQVNEGLAALLAARWGRRQRNTFSFAANDYGFVLSPAQDVPVDAA 680

Query: 670 SLESKLREIAEWDGIDESAVLADV 693
            L+  L     ++ + +S  L ++
Sbjct: 681 LLQELLSPARLFEDLRDSLNLGEL 704