Pairwise Alignments

Query, 303 a.a., Restriction endonuclease from Pseudomonas stutzeri RCH2

Subject, 303 a.a., mrr restriction system protein from Synechococcus elongatus PCC 7942

 Score =  288 bits (736), Expect = 1e-82
 Identities = 144/303 (47%), Positives = 203/303 (66%)

Query: 1   MAIPDFQSVMRPVLQAVGDGVPLPLGALRVRIADVFQLTEEERKERLPSGNQTVINNRVG 60
           M +PD+Q++M P+L+ + D            +A  FQLT  ER+  LPSG Q   +NRVG
Sbjct: 1   MPLPDYQALMLPLLRLLADQQVHRTRDAIEALAGSFQLTPAERQHLLPSGKQFTFDNRVG 60

Query: 61  WARTYLNKAGLLTIPSKGMVQITDRGREALASGPARITVTWLKQFPEFADFHTAKPQVTN 120
           WARTYL KAGL+  P +G +QIT  G+E L   P +I V++L+QF  F +F       T 
Sbjct: 61  WARTYLKKAGLIDSPQRGFLQITTIGQEVLQQNPPKIDVSFLEQFDSFREFRGLSDTNTV 120

Query: 121 AAAVADSDLAETTPDEQLAAAYQALQQSLADELLAQVRAATPSFFEQVVVDLMIAMGYGG 180
             A+ +      TP+E L A Y  L+ +L  +LL  +++ +P+FFE +VV+L++AMGYGG
Sbjct: 121 TPAIMNLTQTPNTPEEDLDAVYHQLRSALRSDLLQTIKSCSPAFFECLVVELLVAMGYGG 180

Query: 181 SRKEAGKATQLTNDDGIDGIIKEDKLGLDVIYLQAKRWANTVHRPEIDKFIGALTRKRAR 240
           SR EAG+A    ND+GIDGIIKED+LGLD+IY+QAKRW + V RPE+ KF GAL  ++AR
Sbjct: 181 SRLEAGQAIGRNNDEGIDGIIKEDRLGLDIIYIQAKRWESVVGRPEVQKFAGALQGQQAR 240

Query: 241 KGVFITTSDFSTGAKEAALGLDIKVVLIDGIELARLMVEHNLGVSVKQVYEVKQVDSDYF 300
           KG+FITTS FS  A +    ++ K++LIDG  LA  M+++N+GV V+  YE+K++D DYF
Sbjct: 241 KGIFITTSTFSKEAADYVRKIESKIILIDGQTLAEYMIDNNVGVVVEATYELKRIDRDYF 300

Query: 301 SEE 303
           +E+
Sbjct: 301 TED 303