Pairwise Alignments

Query, 509 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

Subject, 530 a.a., regulatory protein LuxO from Vibrio cholerae E7946 ATCC 55056

 Score =  416 bits (1068), Expect = e-120
 Identities = 227/496 (45%), Positives = 313/496 (63%), Gaps = 7/496 (1%)

Query: 17  NAVRLQRLVHTLQQRFRCGAVVLLRLDEDSLRPLAAVGLVQEALGRRFVIAQHPRLAAIL 76
           N  R  RL+  +++   C  VVL+ L  D+L PLA  GL ++ LGRRFV+++HPRLA I 
Sbjct: 22  NEERFHRLLDAVRKAVICDCVVLMSLHNDTLTPLAMQGLTRDTLGRRFVVSEHPRLAQIC 81

Query: 77  SQREPTWFEPDSRLPDPYDGLLDAHIGEPLPVHDCMGVSLYVEGKLWGALTLDALHAGTF 136
           S   P  F  D  LPDP+DGLL     + LP+H CMG+ L+   +L G LTLD+L    F
Sbjct: 82  SADLPVRFAADCPLPDPFDGLL-LDSEDDLPMHSCMGLPLHFGEQLLGILTLDSLKPDAF 140

Query: 137 DDDARRDLQRYTLVIEAAVRVT----RLEHENRGLRLARSDVMETTLDHGDGEILGQSDV 192
           D  + R L+    +  A +++T     LE++ +  +L   ++ +        EI+G S  
Sbjct: 141 DHLSPRSLEILAAIAAATLKMTLTFSELENQAKQTQLRLEELNQEAWSRDSVEIIGNSGP 200

Query: 193 IRELLRELQVVADSELPVLLLGETGVGKELFARWLHRHSRRRNKPLVHVNCAALPESLAE 252
           +  +  ++ VVA S+  +L+ GETGVGKEL AR +H+ S R+ +PLV+VNCAA+PE+L E
Sbjct: 201 MLAMKADIDVVAPSQFNILIHGETGVGKELVARTIHQRSNRKRQPLVYVNCAAIPENLLE 260

Query: 253 SELFGHVKGAFSGATTDRPGRFDAANGGTLLLDEVGELPLTVQAKLLRTLQNGEIQRLGA 312
           SELFGHVKGAF+GA   R G+F  A+GGTL LDE+GELPL+ Q+K+LR LQN EIQ +G 
Sbjct: 261 SELFGHVKGAFTGADRARMGKFALADGGTLFLDEIGELPLSAQSKILRALQNHEIQPVGQ 320

Query: 313 DKPRQVDVRIIAATNRNLRESVRDGHFRADLYHRLSVYPAPIPPLRERGNDVLILAGHFL 372
           D+ + VDVRI+AATNR+L++ V  G FRADLYHRLSVYP  +PPLRER  D+ +LAG+F+
Sbjct: 321 DRVQTVDVRILAATNRDLKKEVEAGRFRADLYHRLSVYPIYVPPLRERKGDLSLLAGYFV 380

Query: 373 ELNRARLGLRSMRLSPAAERALLGYSWPGNVRELEHVVSRAALRLLSRGASRSEILTLEP 432
           E  R +LG+  ++L       L+ Y WPGNVRELEHV++RAAL+  +R   R        
Sbjct: 381 EQARRKLGITQLKLHGDVLSQLIQYPWPGNVRELEHVINRAALKAKARQRGRPVTTLKVE 440

Query: 433 DLLDLDSHAVGVTASQVVEEPVIADEV--LPLRHTVDAAQRQAIVRALEASGENWAQAAR 490
           DL +L      +      +EP++ + +  L LR   D  QR  I   L  +  NWA+AAR
Sbjct: 441 DLGELQGPRAAMVEPTAQDEPMLGEWIGELGLRDATDEFQRHLISETLTQADFNWAEAAR 500

Query: 491 LLDVDPSNLHKLARRL 506
            L  D +NL +LA+RL
Sbjct: 501 RLQTDRANLTRLAKRL 516