Pairwise Alignments

Query, 509 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  231 bits (589), Expect = 4e-65
 Identities = 130/315 (41%), Positives = 188/315 (59%), Gaps = 8/315 (2%)

Query: 187 LGQSDVIRELLRELQVVADSELPVLLLGETGVGKELFARWLHRHSRRRNKPLVHVNCAAL 246
           +G S  ++ + R +   A S+  + + GE+G GKE+ A  +H  S+R +KP + +NCAA+
Sbjct: 133 IGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAI 192

Query: 247 PESLAESELFGHVKGAFSGATTDRPGRFDAANGGTLLLDEVGELPLTVQAKLLRTLQNGE 306
           P+ L ESELFGHVKGAF+GA T+R G  +AA+GGTL LDE+ E+ L +Q KLLR +Q G 
Sbjct: 193 PKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGT 252

Query: 307 IQRLGADKPRQVDVRIIAATNRNLRESVRDGHFRADLYHRLSVYPAPIPPLRERGNDVLI 366
            Q++G+ K + VDVR + ATNR+  + V++G FR DLY+RL V P  +PPLR RG+DV+ 
Sbjct: 253 FQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIE 312

Query: 367 LAGHFLELNRARLGLRSMRLSPAAERALLGYSWPGNVRELEHVVSRAALRLLSRGASRSE 426
           +A   L       G   +RLS         Y WPGNVR+L++V+      +L+ G  R  
Sbjct: 313 IAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV--VLNEG--REI 368

Query: 427 ILTLEPDLLDLDSHAVGVTASQVVEEPVIADEVLPLRHTVDAAQRQAIVRALEASGENWA 486
            L + P  L+  S  +        E  V   E+ PL  T    ++QAI +A+EA   N  
Sbjct: 369 TLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMT----EKQAIEQAIEACDGNIP 424

Query: 487 QAARLLDVDPSNLHK 501
           +AA  LDV PS +++
Sbjct: 425 RAATYLDVSPSTIYR 439