Pairwise Alignments

Query, 391 a.a., Cytochrome D1 heme domain. from Pseudomonas stutzeri RCH2

Subject, 348 a.a., surface antigen gene from Xanthomonas campestris pv. campestris strain 8004

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 18/215 (8%)

Query: 160 GRRFIYSLFDTDETWLLDFSQGNEPQITRFEGIGRQPYDALLTPEGRYYIAGLFGEDGMA 219
           G +F   +   ++  L+D  Q    Q+    G  + P     TP+G++ +    G + M 
Sbjct: 139 GTQFAICVEGQNQVMLIDVGQFKVQQVIATRG--QAPEHCAYTPDGKWVLTSNEGSNDMD 196

Query: 220 KIDL-WHPERGVERILDGYGRGQQKLPVYKMPHLEGWTVAGNQTFVPAVGQHRVLVMDSE 278
            IDL  H  RGV     G+ RG    P             G+  ++     + V V+D +
Sbjct: 197 MIDLATHSSRGVVAT-SGHPRGMAFAP------------DGHSVYIAQETANVVDVIDLQ 243

Query: 279 KWQQTDAIDVAGQPIFVMARPDARQIWVNFAHPDNGKVQVIDSETHEIIADLEPGPAVLH 338
              +  +I    +   V    D  +++ +  +   G V V+D+ T   IA++  G    +
Sbjct: 244 TRTRRASIPAGVRTAGVTLSADGTRLYAS--NGGAGSVSVLDTRTGAGIAEIPVGLRPWN 301

Query: 339 MEFTARGDQLWLSVRDGEEIQVWDPYTLKLLKRLP 373
              T  GD+L+++      + V D  TL+ +K++P
Sbjct: 302 PALTPAGDKLYVANGRSNSVSVIDTATLREIKQIP 336



 Score = 31.2 bits (69), Expect = 5e-05
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 64  VVFSRDQRYAYVFGRDGGLTKVDLLRQRIDRRVIQGG-NSIGGAISQDGTLIAVGNYEPG 122
           + F+ D    Y+      +  V  L+ R  R  I  G  + G  +S DGT +   N   G
Sbjct: 218 MAFAPDGHSVYIAQETANVVDVIDLQTRTRRASIPAGVRTAGVTLSADGTRLYASNGGAG 277

Query: 123 GVKVFNANTLELVADIP 139
            V V +  T   +A+IP
Sbjct: 278 SVSVLDTRTGAGIAEIP 294



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 85  VDLLRQRIDRRVIQGGNSIGGAISQDGTLIAVGNYEPGGVKVFNANTLELVADIPATPLA 144
           +DL        V   G+  G A + DG  + +       V V +  T    A IPA    
Sbjct: 198 IDLATHSSRGVVATSGHPRGMAFAPDGHSVYIAQETANVVDVIDLQTRTRRASIPA---- 253

Query: 145 DGSRNARVVGVIDVPGRRFIYSLFDTDETWLLDFSQGNEPQITRFEGIGRQPYDALLTPE 204
            G R A V   +   G R   S        +LD   G    I     +G +P++  LTP 
Sbjct: 254 -GVRTAGV--TLSADGTRLYASNGGAGSVSVLDTRTG--AGIAEIP-VGLRPWNPALTPA 307

Query: 205 G-RYYIA 210
           G + Y+A
Sbjct: 308 GDKLYVA 314