Pairwise Alignments

Query, 130 a.a., prepilin-type N-terminal cleavage/methylation domain from Pseudomonas stutzeri RCH2

Subject, 144 a.a., pilin polypeptide PilA-like from Synechococcus elongatus PCC 7942

 Score = 44.7 bits (104), Expect = 5e-10
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 32/121 (26%)

Query: 7   RGFTLIEVMIVVVIIGILASIALPNYRQYVIRSNRTAAQAQMLDIANRQQHFLLANRAYA 66
           +GFTL+E+++V++I+GILA++ALPN                   +A   + +    ++  
Sbjct: 25  KGFTLVELLVVIIIVGILAAVALPNL------------------LAQTDKAYASEGKSAV 66

Query: 67  DAAALTASGFSLSGEVSPHYSFDVTVGSGTVPSYLITFTAIGSQASDGDLTLNNEGVKTP 126
            AA  T S  +L     P+Y          V +   T   IGS A + DLT  N    T 
Sbjct: 67  GAALRTLSAATL----DPNY----------VTNASCTQLGIGSSAGNFDLTCGNASQVTA 112

Query: 127 A 127
           A
Sbjct: 113 A 113