Pairwise Alignments

Query, 1005 a.a., hypothetical protein from Pseudomonas stutzeri RCH2

Subject, 1071 a.a., type 4 fimbrial biogenesis PilY1 signal peptide from Cupriavidus basilensis FW507-4G11

 Score =  497 bits (1279), Expect = e-144
 Identities = 392/1140 (34%), Positives = 541/1140 (47%), Gaps = 229/1140 (20%)

Query: 6    NRFLLALAVSLA--QAASAEDIDLFVGVPSSSTGAPNVLIVLDNTANW------------ 51
            +R  +A   SL   + A AEDIDL+ G+   + G PNVLI+ DN + W            
Sbjct: 10   SRIAIAALFSLCVVRPAMAEDIDLYTGLQPQA-GKPNVLILFDNASTWDASASFTCSTAN 68

Query: 52   ----NNAFSN---EMAALRSVISALPED-----KFRVGIMMFTETGGSNSGADGAYVRAA 99
                NNA  +   E  AL + ++++           +G+MMF    G+N G    +   A
Sbjct: 69   VVSSNNAGKDVGAEQCALYNAVASIKNSPALLGNLNLGVMMFGT--GNNVGGSMRFPSVA 126

Query: 100  ---LRPMDAANKIAMANLVTSFDKLGDKSNGGKVSLAMQEAYLYFAGATPYAGNKKAKTD 156
               L  MD+         V S D+  D SN  +V   MQE++ ++AG T  +G K     
Sbjct: 127  PYKLPLMDSTGVDNFLTYVKSIDRQADNSNNSQVGGGMQESWAFYAGRTGLSGTK----- 181

Query: 157  FAGNRGVSTAADAVYALPNNALASKDATSYLSPIVSGCGKNYVIYISN----GPAQDNSS 212
                                         Y SPI + C +N+VIYI+N    G  QD   
Sbjct: 182  -----------------------------YTSPIDNPCQRNFVIYIANAVNNGKPQDTGQ 212

Query: 213  DITQATTALAGLGGSTT------TIPITPSDSQDNVADEWARFMKKSSEQ--------IT 258
            ++  A  A     G+TT      TIP   +  Q N  DEWARFM ++  Q        I 
Sbjct: 213  NVINALVA----AGATTAQQQQITIPAPYNGYQSNWGDEWARFMYQTDVQGNMANQQNIV 268

Query: 259  TYTIDINRTTNRQGLGWTALLQSMARTSDGKYFDVT-STGNQIVDALNAIFSEVQATNSV 317
            TYTI +    N   + +T    SM     GK + V     N +  AL  IF+EVQA NSV
Sbjct: 269  TYTIAVTDGKNPDYVQFT---DSMGTNGGGKTYVVQLGDVNGLTSALLQIFNEVQAVNSV 325

Query: 318  FASVSLPVSVNAQGTYLNQVFIGMFRPDGDGFPRWYGNLKQYKLGYIG-SDLRLLDADGV 376
            FASVSLP SVNAQG +LNQV++GMFRPD    PRW GNLKQY++GY    ++ L DA G 
Sbjct: 326  FASVSLPASVNAQGQFLNQVYVGMFRPDATAAPRWMGNLKQYQIGYNSKGNIVLQDASGN 385

Query: 377  SAI-NSNTGFITECARSFWTP----TAADSYWG------FSARGNCLTGADSSGSN--SP 423
            SAI N+ TGFI+  A S+WT     T + S +G      + A+G       S+G N  SP
Sbjct: 386  SAISNAATGFISPGAVSYWTAEPPLTFSTSGYGTGGVANWPAKGFWTNSPSSTGWNLDSP 445

Query: 424  DGNIVEKGGQGYLLRA-----SSSRNMLTCGTASGC---TSLTSFSTTN------NGITA 469
            DG +VEKGG G +LRA       SR + TC  A  C    ++ +F T N      NG+ A
Sbjct: 446  DGEVVEKGGAGEMLRAQLLTSQDSRVLFTCNGAGNCPTNAAMPTFDTANTWLNGANGLAA 505

Query: 470  TALNAA-----NETERTAMINWARGVDLK-----------DENGNGNVSEMRPSVHGDVV 513
                 +     + TE   +I W RG D+K            + G G+   +R S+H DV+
Sbjct: 506  VNAGTSGAATISSTELPKLIAWMRGADVKAADASSIAGQEAQQGPGSPVTVRGSIHADVL 565

Query: 514  HSRPVAINYGTAGNPNVVAFYGGNDGALRAVVGNRTSALGTHAAGSELWSFMPPEFYGKI 573
            HSRP  +NYG  G+  VV FYG NDG   A+ GN+   +G+   G ELW F+ PEF GK+
Sbjct: 566  HSRPAVVNYG--GSTGVVVFYGTNDGVFHAINGNQAQGIGSVRPGGELWGFIAPEFLGKL 623

Query: 574  KRLYDNNVPISF---PGYVGTSTPQPKDYGMDGPVVAYQD-----ESSAWIYATMRRGGR 625
             R+Y N+  +     PG + T  P P+DY  DG     QD          +Y T RRGGR
Sbjct: 624  SRIYTNSPEVKLSTTPGGI-TPAPTPRDYFFDGSTTVMQDLRDPAHPRIVLYLTARRGGR 682

Query: 626  AVYAFNVNTPASPSLKWKRGCPNNFDANGAVVDTSCSDGFSGIGQTWAPPKLLKASGYGN 685
             +YA +V  PA+P   WKR    N D             F  +GQ+W+ P++++A G   
Sbjct: 683  LIYALDVTDPANPRYLWKR---TNAD-------------FPELGQSWSQPRVIRARG--- 723

Query: 686  GTAPMLIMGGGYDACEDGDPHTCTDATKGNKVYVLDADSGE---------------LLRT 730
              + +++MG GYD  ED DP   TD   G  V VLDA +G                 L  
Sbjct: 724  SASALIVMGAGYDTTEDSDPAPGTD-IMGRGVLVLDALTGSPVWSALPSCAGMGGTCLPV 782

Query: 731  FDTQRSVISDVTLV-RNSAGQALYGYLADLGGNVYRI---TMGASAPLQWTMTRIAALGC 786
             D  R++ SDVT++ RN  G     Y+ D+GGN++R    T   +AP  WT+ ++AALG 
Sbjct: 783  PDLTRAIPSDVTVLDRNGDGYIERFYVGDVGGNIWRADLETTAGNAPANWTLNKLAALGG 842

Query: 787  ATAGTCTRNRKFMFAPDIVADGADYVLMLGSGDREKPLLDYDDAAAT----TNYFFMLRD 842
            A+       RKF + PD+V+      +  G+GDRE PL        T     N  +M++D
Sbjct: 843  ASGTNAA--RKFFYPPDVVSTAGYDAVTAGTGDREHPLYSASTTPGTAYNVVNRLYMVKD 900

Query: 843  R---PSDSTWL-TSEASNCGGNLLCMNSLLGVTTQSAPTTTSLGQKKGWYLQL-DATEQV 897
                   STW   +EA              G+   +  T T  G   G+Y+ L +  E+ 
Sbjct: 901  TNILGMPSTWKPITEA--------------GLVDATTLTGTYDGSGSGFYITLTNPGEKA 946

Query: 898  VTSAITVFGDVTFSTHQPRVPTSGVC-SGLGETRVYTVNYLT--GQGVYHDVV--GDGLP 952
            V + +TV G  T  T+ PRVP +  C   LG  R Y+ ++LT  GQ     ++  G G P
Sbjct: 947  VNAPLTVSGYTTIGTNTPRVPDANTCYPNLGIARSYSFSFLTSAGQNPARSIILDGGGFP 1006

Query: 953  PSPVAGMVTLDDG--VTTVPFVI---------GADPSSPLQGSPPINPASVMQPTSRVFW 1001
            PS V GMV++  G   T VP ++         G D +S L G+  +N A V +   R++W
Sbjct: 1007 PSSVFGMVSIGSGTSATVVPVLLGGGNQTGPGGGDATSAL-GAQKVNIAGVGK-RKRIYW 1064