Pairwise Alignments

Query, 332 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 63/279 (22%), Positives = 128/279 (45%), Gaps = 7/279 (2%)

Query: 46  ALLLKQLVEQRMAGKVKVEVYPNSTLVGDAEEMQALFDNKVQLLAPSMSKFAPYTKKLQV 105
           A +L   +E+   G++K+ +YP++ L  D   +Q L    + +      +   +  + + 
Sbjct: 42  AKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEA 101

Query: 106 FDLPFLFDDAEALQRFQKREAARQLLRSMADHGVY-GLAYWNNGLKQLSATTPLRKPSDA 164
             LP++  D + L+R  + +  + +   M     +  L  W NG ++ ++  PL    D 
Sbjct: 102 VMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDF 161

Query: 165 NGLAFRIQPSPVLEAQFAAV-GAKSVVLPFAKVYESLKGGVVQGAENPWSNILSQNMHSV 223
            GL  R+ P+      +A + GA    + F++VY +L+   V G ENP   I +   + V
Sbjct: 162 KGLKLRV-PNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEV 220

Query: 224 QPYITESNHGVLDYMLITNNDFWLSMPFAVRSELEGIILEVTQAVNREAAAVNRRDRERI 283
           Q  +  ++H V D M+I +   W  +    +     II +  Q V        +     +
Sbjct: 221 QKNLAMTHHIVNDQMVIISESTWQKLSDTDKD----IIQKAVQKVGDAHTQTVKTQEAEL 276

Query: 284 LASGSSQLITLTPEERQAWREQMLPVWKTYEADIGADLI 322
           ++   S+ I +T  + + +RE M P++K ++++IG  ++
Sbjct: 277 VSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIV 315