Pairwise Alignments

Query, 341 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 71/321 (22%), Positives = 140/321 (43%), Gaps = 16/321 (4%)

Query: 24  VLTLSPLIAQAAEPIVIKFAHVVGDDTPKGKGALLFQTLVRERLAGKVDVEVYPNSTLVG 83
           +LTLS   A       +K        + +   A +    + E   G++ + +YP++ L  
Sbjct: 11  ILTLSAA-ASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGD 69

Query: 84  DADEMQALLDNKVQMLAPSLSKFIEYSPKLEVFDLPFLFDDDAAVARFQKREASRDLLRS 143
           D   +Q L    + +      +   + P+ E   LP++  D   + R  + +  + +   
Sbjct: 70  DRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDE 129

Query: 144 MAGRGIY-GLAYWNNGLKQLSANQPLQTPADAAGLAFRIQPSPVLEAQFAAVD-AKAVRL 201
           M  +  +  L  W NG ++ ++N+PL +  D  GL  R+ P+      +A +  A    +
Sbjct: 130 MLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRV-PNAKQNLNYAKLSGASPTPM 188

Query: 202 PFSEVSKAMQSGTVQGTEGPWSNIRGQNAGLKQSYVTETNHGVLNYMLVTNSEFWTSIPF 261
            FSEV  A+Q+  V G E P   I+       Q  +  T+H V + M++ +   W  +  
Sbjct: 189 SFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQKLSD 248

Query: 262 AVRSELENIVLEV----TQTVNAEAAAINQREREQILASGNTTLVTLTPAQRQAWRVKMQ 317
             +  ++  V +V    TQTV  + A        ++++   +  + +T    + +R  MQ
Sbjct: 249 TDKDIIQKAVQKVGDAHTQTVKTQEA--------ELVSFFKSEGINVTYPDLEPFREAMQ 300

Query: 318 PVWKSFEAHIGADIMRAALAV 338
           P++K F+++IG  I+    A+
Sbjct: 301 PLYKEFDSNIGQPIVSKLAAM 321