Pairwise Alignments

Query, 1390 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 940 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  212 bits (540), Expect = 1e-58
 Identities = 164/551 (29%), Positives = 257/551 (46%), Gaps = 47/551 (8%)

Query: 869  FIDITDRRRAEERLEAGEAHMRRLAQSTKGYAIITLDVDGIITTWNRGAQTLFGYDEQEA 928
            F D+T+ R+AE      EA +R     +   AI++  +DGI+T+WNRGA+ LFGY   E 
Sbjct: 399  FYDVTESRQAERIARQYEAIVR-----SSDDAILSKTLDGIVTSWNRGAEELFGYSAAEM 453

Query: 929  IGQCIDMLYTEQDRQAGVPETERKHALEHGQASDERWHLRRDGSQRFFSGLVNPLVDSEG 988
            +G+    L+  +         ER    E  +  D R  +R+DG     S  ++PL+D EG
Sbjct: 454  VGRSTLHLFPPECLAEERDILERLRRGETVKHFDTR-RIRKDGRIVDVSVTISPLLDGEG 512

Query: 989  KVIGLAKIARDLTEERKQSSEQQNELETIQ------------------AANLQKDQFFAV 1030
            +V+G++KIARD+T  +   +E Q   + ++                  +AN+ K  F A 
Sbjct: 513  RVLGISKIARDITARKAAEAELQRHRQRLEELVQERTRQLEELKDAAESANVAKSAFLAN 572

Query: 1031 LSHELKHPLNLIQLNTDLLARSPAAKTSPSLRKATQAIQNAVRSQSRIIDDLMDVSRIRT 1090
            +SHE++ PLN +   T L+ R   A   P   +    ++ A +    +I+ ++D+S+I  
Sbjct: 573  MSHEIRTPLNAMTGLTHLIRR---AGLKPQQAEHMDKLEAAAQHLLGVINAILDLSKIEA 629

Query: 1091 GKLKLHFATLRYQDVLRGIEAVFEPLAQAENVVFEAFKPDEPIYIQADPTRLDQIIWNLL 1150
            GK  L  A +R + +L  + +  +   QA+ +V        P ++  DPTRL Q + N  
Sbjct: 630  GKFALEEAPVRVESLLGNVASFLQERVQAKGLVLRTEAQPLPPHLLGDPTRLQQALLNYA 689

Query: 1151 NNAWKFTKGGE-RICMQLKRDGDQ---ARLDVIDTGQGISADFLPKVFDMFGQAEMHHAQ 1206
             NA KFT+ G   + +    +G+     R +V DTG GI  + + K+F  F QA+ +   
Sbjct: 690  GNALKFTEQGSITLRVHTLEEGEADALLRFEVQDTGIGIPPEAMHKLFSAFEQAD-NSTT 748

Query: 1207 RTKHGLGIGLALVKQLVEAHNGHIEAYSEGIGRGARFSVWLPIHLQTEMELNELQNGAEL 1266
            R   G G+GLA+ ++L +   G   A SE  GRG+ F  W    L+   E     NGA L
Sbjct: 749  RRYGGTGLGLAITRKLAQLMGGEAGASSEP-GRGSTF--WFTARLKKGKE--RYGNGAPL 803

Query: 1267 GG----------LTGIRILLVDDSPDILETMCELLESEGANVTTADGGAQGIELAEQTPF 1316
             G            G  +LL +D P   E    +LE  G  V  A  G   +E A    +
Sbjct: 804  AGGNAEQRLRQEFAGRTVLLAEDEPINQEITKFMLEDVGLRVELAPDGKVAVERARGNDY 863

Query: 1317 DVIVSDIGMPDTDGHKMMSIIRNHGANMHTPSIALTGYGTLSDVEKARAAGFTLHLRKPI 1376
             +I+ D+ MP  DG      IR    +  TP +A+T      D  +   AG    + KP+
Sbjct: 864  ALILMDMQMPLMDGLDATREIRQLQRHRQTPILAMTANAFAEDKARCLGAGMNDFIAKPV 923

Query: 1377 DLQALIDAVTQ 1387
            +   L   + Q
Sbjct: 924  NPDVLYATLLQ 934



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 19/116 (16%)

Query: 620 TGKSVEARRVRLERDGRSFYVNMVVRPFRDNEAGNEYVLVIFDEVEACMDTGASDGAEAK 679
           T K  + RR+R  +DGR   V++ + P  D E        +    +   D  A   AEA 
Sbjct: 482 TVKHFDTRRIR--KDGRIVDVSVTISPLLDGEGR------VLGISKIARDITARKAAEA- 532

Query: 680 DSVLTQLETELQQTKEQLQITMEHSETSTEELRASNEELQ-AINEELRSATEELET 734
                    ELQ+ +++L+  ++      EEL+ + E    A +  L + + E+ T
Sbjct: 533 ---------ELQRHRQRLEELVQERTRQLEELKDAAESANVAKSAFLANMSHEIRT 579