Pairwise Alignments

Query, 425 a.a., cytosine permease (from data) from Pseudomonas stutzeri RCH2

Subject, 411 a.a., cytosine permease from Methanococcus maripaludis S2

 Score =  291 bits (744), Expect = 3e-83
 Identities = 158/401 (39%), Positives = 241/401 (60%), Gaps = 5/401 (1%)

Query: 6   DTDYPLSEVPAGARKGLWSTSILLFGFTFFTATMFAGGKIGLAFDFKTMLWAAVIGNLLL 65
           D DY L  VP+ ++KG      ++ GFTFF+A+M+AGG IG    F+T L A ++GNLLL
Sbjct: 8   DQDYALETVPSESKKGFLPMFAIMLGFTFFSASMWAGGTIGTGLKFQTFLLAVLMGNLLL 67

Query: 66  GLYAAALGLIACRSGLNSVLMGRFCFGEAGSRLSDFLLGFTQIGWYAWGTATIAIVLVRL 125
           GLY  AL  I   +GL++ L+ R+ FGE GS L+ F+L  TQ+GW+  G A  ++ +   
Sbjct: 68  GLYTGALAYIGSSTGLSTHLLARYSFGEKGSYLASFILAITQVGWFGVGVAMFSLPVHYA 127

Query: 126 LALPESWTMPLMVLFGFGFCLTAFVGYKGLDLLSRIAVPAMLILLIASLWTATRDIGGLD 185
             +  +    L++L G     TA+ G K L +LS I+VPA+ +L I S+  A   IGG+ 
Sbjct: 128 TGIDLNI---LLLLSGILMTTTAYFGIKSLTVLSMISVPAITLLGIYSVTGAVNSIGGIS 184

Query: 186 GLLAVQPGDSLTLGMAITMIFGTFVSGATQATNWTRFARSSKVAVWASLIGFFIGNGLMI 245
            L A++P ++L L + +++  G+F+SG T   +++RF++S  + V ++ I FFIGN LM 
Sbjct: 185 ELFAIEPANNLGLAVGLSLCIGSFISGGTLTPDFSRFSKSKSIGVISTFIAFFIGNSLMF 244

Query: 246 VAGAYGAIVYQQPDIVEVLVLQGLSMAAVVMLFLNLWTTQDNTIYNFAAAGCNLLRTERR 305
           + GA GA    Q DI EV++ QGL + A+++L LN+WTT DN +Y       N+ +  ++
Sbjct: 245 IFGAVGASTLGQSDISEVMLKQGLIIPAIIILGLNIWTTNDNALYASGLGFSNITKIPKK 304

Query: 306 RLVTLGGAFVGTLLALGGMYELLIPFLILLGSIIPPIGGVIMADYFYRHRGHYPKLAEAR 365
            +V   G  +GTL AL  +Y   + +L LL SIIP IGG+I++DYF   R  Y  L   +
Sbjct: 305 HVVIFNG-LIGTLGAL-VLYNNFVGWLTLLSSIIPSIGGIIISDYFINKRQKYASLENIK 362

Query: 366 LPKYNSLGLAAYVLGAACAYFSPWVAPIVGILVAAAAYIVL 406
           + K +   + A+VLG   + F P ++PI  +  +A  YIVL
Sbjct: 363 VKKVHWNAVIAWVLGVFASQFLPGISPINAVFGSAIIYIVL 403