Pairwise Alignments

Query, 265 a.a., Bacterial regulatory helix-turn-helix proteins, AraC family. from Pseudomonas stutzeri RCH2

Subject, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 25/227 (11%)

Query: 41  YDEQMLHPDGACGVIFNFADPLAFDGHLH-----KPRALIAGPQLASSRLQLAGQVRLMG 95
           Y +   H  G  GV+    D L  DGH H     + +     P+     L+     +++G
Sbjct: 50  YHQGAWHQVGQGGVVLMSPDEL-HDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIG 108

Query: 96  VRFRPGMGAAFFGISLDELAGFHSSDWQRLGFAGMVDQLAELSREAQQLLVEQELMKRLQ 155
                     F  + + +   FHS   Q+L      D L++L+++         L++R  
Sbjct: 109 ----------FEQLIVQDPTLFHSL--QQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYS 156

Query: 156 -ATQERRSPVQQ----LLSE--ITATEGRARLADLLQTVPLGQRQLERLFRHHVGMTPKQ 208
              Q    P+ Q    LL E  ++  +   RL  L Q   L   Q +R F+   G+TP  
Sbjct: 157 YLKQPTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYA 216

Query: 209 FSRIQRVALVRNQLRAGQPLLDTALACGYSDQAHFIHDFKTVVGMTP 255
           + R  R+      L++G+P  D A   G+ DQAHF   FK   G++P
Sbjct: 217 WLRRLRLEQAMKLLQSGKPGTDVAYQVGFYDQAHFSKAFKATYGLSP 263