Pairwise Alignments

Query, 329 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas stutzeri RCH2

Subject, 342 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  213 bits (542), Expect = 5e-60
 Identities = 134/328 (40%), Positives = 191/328 (58%), Gaps = 13/328 (3%)

Query: 5   RTVACLIYPDVMSLDVTGPMQVFASANVERQRQGLPRHYELMLLAASVGP-VATSAGLKL 63
           + V  L  P V SLDVTGP +VFA AN  R  +G    Y L L+AA     + +S G+ L
Sbjct: 17  KRVVILGLPPVDSLDVTGPAEVFAFAN--RLHRGDTAPYLLELVAAGANEHLESSTGIAL 74

Query: 64  VADASWAV--CDPATLDTLLVPGGVGVNSQKHDQPLLDWLRAAEPRVRRLGSVCSGALIL 121
           +A  +      D   +DTL+V  G     Q  D+  ++W+R     VRR+ S+C GA  L
Sbjct: 75  MAHKTLDQERSDNEAIDTLIVTSGWKAQEQV-DESAINWIRTKSESVRRVCSICVGAFAL 133

Query: 122 AEAGLFDGRKATTHWADLAALG-TYPAIEVQGDRLHTYDPTDPQAAHLFSSAGVTAGIDL 180
           AE GL DGR+ATTHW    +L  +YP ++V  + +   D       ++++SAG++AGIDL
Sbjct: 134 AETGLLDGRRATTHWRMARSLADSYPQVQVDPNPIWVKD------GNVYTSAGISAGIDL 187

Query: 181 ALALVEADLGRALALSVAQRLVMFLRRPGGQTQFSPMLTAPSGGVARLAALLEWIPGHLG 240
           ALALV  DLG  +A+ +A+ LV+FLRRPGGQ QFS  L +     + L  L  WI  HL 
Sbjct: 188 ALALVSEDLGDEVAMEIAKNLVLFLRRPGGQAQFSVALQSQHVPGSNLDELCLWIAEHLH 247

Query: 241 DDLSIEALAAQAHMTPRTLCRLFSQETGMGPGQYIERVRLEAARNLLLDAQASIATVARL 300
            DL++E LA +   + RTL RLF +E    P +Y+E VR+EAA   +     S+  VAR 
Sbjct: 248 SDLTVEILADKFSTSVRTLIRLFQRELQTTPAKYVEDVRIEAACRSIELGGRSMEEVARR 307

Query: 301 TGFGHPENLRRSFQKHLSVSPRDFYQRF 328
           +G+   + LR++F + + VSP+++ QRF
Sbjct: 308 SGYHSVDVLRKAFVRRIGVSPKEYAQRF 335