Pairwise Alignments

Query, 390 a.a., drug resistance transporter, Bcr/CflA subfamily from Pseudomonas stutzeri RCH2

Subject, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  244 bits (622), Expect = 4e-69
 Identities = 142/388 (36%), Positives = 220/388 (56%), Gaps = 4/388 (1%)

Query: 1   MSLRILLILGALSAFGPLAIDMYLPAFPLLAQSFGTSVDHVQLSLAAYFIGLAIGQLVYG 60
           MSL + ++LGAL A  PLAIDMYLPA P +A+ FG +   VQ++L AY  G AIGQL++G
Sbjct: 14  MSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHG 73

Query: 61  PLADRYGRRGPLLIGVTLFTLASLASAFAPSMDWLIGVRFVQALGGCAGMVVARAVVRDL 120
           PLAD +GRR  +L G+ LF +A++ SA    ++ L  +R  Q   G A  VV +AVVRD+
Sbjct: 74  PLADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDM 133

Query: 121 CDPMTSAKVFSQLMLVMGLAPILAPVAGGALLASFGWPSIFILLTLFSAMCLVAVTLWLP 180
            D    A+  S + LV+ LAP++AP+ GG L   FGW SIF +L LF+A+ +  V   +P
Sbjct: 134 FDREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIP 193

Query: 181 ETYPAGLPRQPM--SGALGQYLRLFRDRFFIGHVLTGALCMAGMFAYITGSPFVFIELYG 238
           ET  +   RQP+     +  Y  L ++   +G + +GA   AGMFA++T   FV+I++YG
Sbjct: 194 ETL-SPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVYIDIYG 252

Query: 239 VKPEHFGWLFGINAAGFILMAQVNVRLVRWRGPEFWVRRWVWFFFGSALALLAVAAAQPE 298
           V P+ FG+LFG+N    I +  +N R V+  G    +R  ++    + + L  V+     
Sbjct: 253 VSPDGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLF-VSWVLDW 311

Query: 299 SLWPLLIPLFCCVSCLGCLLPNATACAMADQRANAGSASALLGSMQFTIAAIAASAVGAL 358
            LW  +  +   V  +  +  N+    ++     AG+AS+L G+++F   +I  + V AL
Sbjct: 312 GLWGTVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLRFGTGSIIGAVVAAL 371

Query: 359 HNGTAVPLAAIISLCGLLATVVAYTTAR 386
                 P+  +++ C +L+    +T  R
Sbjct: 372 PGTETWPMIFVMAACSVLSGAFYWTLGR 399