Pairwise Alignments

Query, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  255 bits (652), Expect = 3e-72
 Identities = 148/354 (41%), Positives = 218/354 (61%), Gaps = 2/354 (0%)

Query: 289 SRLIVSTLLALVLGVLAAWLITRQIILPLRTTMADVERIASGDLSETAQIQR--RDELGV 346
           S  + S +  L + VL  WL+TR I  PL   M     IA GDLS+T        DELG 
Sbjct: 189 STSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRSSIGNDELGT 248

Query: 347 LQRGIQQMGSTLRELIGGIRDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQVATAMHE 406
           L    +QM   LR+LI  I   V+Q+S+A EE++ ++ Q++ G+  Q+ +  QVATAM +
Sbjct: 249 LANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQ 308

Query: 407 MSATVQEVARNAEQAALAATEADSEAREGDRVVTEVVTQIERMASAVVRSTEAMTALQEE 466
           M A V +VARN E +A  A  A+ +++EG R    +V  I+++A  +  + + ++ L+++
Sbjct: 309 MKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQ 368

Query: 467 SDKIGSVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEI 526
           S +I  V++VIR++A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RTQ ST EI
Sbjct: 369 SSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEI 428

Query: 527 EGLVAALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQIAAAA 586
             ++  LQ   +Q       SR   D  VE    + + + SI  +++NI  +  QIA+A 
Sbjct: 429 TTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASAC 488

Query: 587 EEQSAVAEEISRSVVNVRDVSEQTAAASEETAASSTELARLGGQLQMMVSRFRL 640
            EQ +VA+E+SR+V N+   S++ A  S++TA +  EL +L   LQ  + RF++
Sbjct: 489 SEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542



 Score = 45.1 bits (105), Expect = 8e-09
 Identities = 56/284 (19%), Positives = 121/284 (42%), Gaps = 44/284 (15%)

Query: 221 ANSGAALQQ-IRTVLDEYRSAI----QALETATQAIAKARQEMTDQQKEIVRISDSLYQF 275
           AN+   +QQ +R ++DE  SA+     A+E  TQ   ++   M +QQ +I +++ ++ Q 
Sbjct: 250 ANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQM 309

Query: 276 QLDRLDV--ESSDARSRLIVST------------------LLALVLGVLAAWLITRQ--- 312
           +    DV   + D+ S+ + +                    +A ++G     +   +   
Sbjct: 310 KAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQS 369

Query: 313 ----IILPLRTTMADVERIASGDLSETAQIQRRDELGVLQRGIQQMGSTLRELIGGIRDG 368
               +++ +  ++AD   + +  L+   +  R  E G   RG   +   +R L G  +D 
Sbjct: 370 SQINVVVDVIRSIADQTNLLA--LNAAIEAARAGESG---RGFAVVADEVRTLAGRTQDS 424

Query: 369 VSQISAAAEELSAV-------TQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNAEQA 421
             +I+   E+L  +       T+++ + ++   E+ +   + M  +  ++  +A    Q 
Sbjct: 425 TGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQI 484

Query: 422 ALAATEADSEAREGDRVVTEVVTQIERMASAVVRSTEAMTALQE 465
           A A +E DS A E  R V  +    + +A    ++ +A   L +
Sbjct: 485 ASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQ 528