Pairwise Alignments

Query, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  143 bits (361), Expect = 6e-39
 Identities = 98/354 (27%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 4   TPAFPVSKAWLTIIACALPLLGGCSSEAEPAPEPPRV--ALVEPLRPAESKAEALRFSGV 61
           T +    ++ L+ +  +  LL GC    + +   P V  AL E +  A  +A  L F+GV
Sbjct: 6   TRSMAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIV--ASQRASDLTFNGV 63

Query: 62  VQSVTSTQLSFEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADL 121
           V++     L+F +SGR+  I + EG +V++GQ LA LD  D +  L  A+  L+  E + 
Sbjct: 64  VRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEY 123

Query: 122 ARKRTLLAE-GILAPAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPD 180
            R + +  +   ++ A ++ +      A+   + A+R ++++ +TAPFDGV++ +  E  
Sbjct: 124 RRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENF 183

Query: 181 MVVAVGTPVFEMQDNRHIEVSVDLPESAALSIPLGPELQAEAELVIADLRLPLRYKEHST 240
             V     +  +QD   +EV++++P    LS        AE    I + +  L+ + +ST
Sbjct: 184 AQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELS-AIPNQQFDLKLRTYST 242

Query: 241 QPREGARTYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDGK 300
           QP   ++TY +VL  E  + F ++PGM+ +V +    +P  +N    LPL+AL   + GK
Sbjct: 243 QPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPDNQGK 301

Query: 301 HFIWQA-ADGRARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPI 353
            F+W   A  +A +  V++     D+ +I    L+    +I+AG S + +   +
Sbjct: 302 QFVWVVNAQNQAEKRYVDIGTTYKDRVVIT-QHLKPGEQVIIAGVSSVREGMTV 354