Pairwise Alignments

Query, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  124 bits (312), Expect = 3e-33
 Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 21/357 (5%)

Query: 12  AWLTIIACALPLLGGCSSEAEPAPEP-PRVALVEPLRPAESKAEALRFSGVVQSVTSTQL 70
           AWL      L L+ GCS   +   +  PRV + +     E  ++ L F  V  +   + L
Sbjct: 18  AWLA----HLLLIAGCSEPTKLERDTLPRVKVAQA---GEKVSDKLFFPAVANAAERSHL 70

Query: 71  SFEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADLARKRTLLAE 130
           SF V+G I +  + EG RV++G  LA+++ TDYRL +  A+AR   +++   R + L+ +
Sbjct: 71  SFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEK 130

Query: 131 GILAPAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVGTPVF 190
           G+LA +  + + A    AR   + A+  +  + L AP DG+++R  AE    V VG  + 
Sbjct: 131 GLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIV 190

Query: 191 EMQDNRHIEVSVDLPESAALSIPLGPELQAEAELVI---ADLRLPLRYKEHSTQPREGAR 247
            + +   +EV + LP+    + P   EL A+ E V+   +    P R KE +T+P     
Sbjct: 191 NIHNIDSVEVLIQLPDRLYATQPTASEL-AKIETVVRVPSGQVYPARIKEFTTEPDPATG 249

Query: 248 TYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDG------KH 301
           T+ + L    PE   +L GMA+ V  +         +   +P+ A+   +DG        
Sbjct: 250 TFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI-FNADGDELDKTAQ 308

Query: 302 FIWQA-ADGRARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPIEARE 357
           ++W    D    +  V L +       +  + + A   ++VAG ++L D   ++  E
Sbjct: 309 YVWLLNNDNTVSKRQVRLAKASRSHVQV-SEGINAGDRLVVAGVARLRDGMKVQVLE 364