Pairwise Alignments

Query, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 358 a.a., periplasmic linker protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  114 bits (285), Expect = 4e-30
 Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 15/344 (4%)

Query: 23  LLGGCSSEAEPAPEPPRVALVEPLRPAESKAEALRFSGVVQSVTSTQLSFEVSGRIERIL 82
           LLG C    +    P RVA+     P+        FSGV ++   T L+F V GRI RI 
Sbjct: 14  LLGSCRQAPDIEHTPARVAVYTI--PSTENQVTRVFSGVARAQDLTALAFRVEGRIARIP 71

Query: 83  IDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADLARKRTLLAEGILAPAAIEALQ 142
           + +G RV+ G  LA L++ D+++ L +  ARL        R +TL+ + ++A A  + + 
Sbjct: 72  VTKGQRVKAGDVLAVLEKNDFQIALNDRRARLDVTRKQAERSKTLVDQQLMAQAEYDQMN 131

Query: 143 ANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVGTPVFEMQDNRHIEVSV 202
           A  + AR     A+  ++++ L APFDG++     +    V  GT V  +     IEV V
Sbjct: 132 AEYLVARAEARQAELMLEYTKLKAPFDGLIGDVFLKSFENVQPGTLVLSVHRTERIEVDV 191

Query: 203 DLPE---SAALSIPLGPELQA--EAELVIADLRLPLRYKEHSTQPREGARTYRLVLQGEP 257
            +P+   + +     G + Q    A     D        E +T+    + TY   +  E 
Sbjct: 192 QVPDLLIAVSRRAETGQQKQGFDVAFEAFPDKSFIGHLLEVNTEKDPQSHTYVATVAVEL 251

Query: 258 PEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSA--LQTGS-----DGKHFIWQAADGR 310
           PE   +L GM  +V ++      T    + LP+SA  ++ GS     D   +++ +A G 
Sbjct: 252 PEGVKVLEGMPAKVTVDLGKATYTYRREYLLPISAVVMRDGSDIDLQDAGVWLYDSATGT 311

Query: 311 ARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPIE 354
            +   V L  + G Q++   D L     ++  G S+L D Q +E
Sbjct: 312 VKFKPVRLGVIVG-QSIEVVDGLADGQQVVTQGASRLVDGQQVE 354