Pairwise Alignments

Query, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 368 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  101 bits (252), Expect = 3e-26
 Identities = 106/357 (29%), Positives = 155/357 (43%), Gaps = 43/357 (12%)

Query: 21  LPLLGGCSSEAEPAPEPPRVALVEPLRPAESKAEALRFSGVVQSVTSTQLSFEVSGRIER 80
           L +L GC+S+A+ A E P+   V   +   +  +   ++GVV + T + L F VSG++  
Sbjct: 15  LIVLNGCNSKADTAAEVPQPRPVLAAKVEAAGTQQSAYTGVVAARTESDLGFRVSGKVIE 74

Query: 81  ILIDEGTRVRRGQTLAQLDRTDYRLQLRE-------AEARLRQLEADLARKRTLLAEGIL 133
             +D G  V RG TL  LD  D+ L LR        A+A+LRQ   D  R + L + G +
Sbjct: 75  RKVDPGQHVSRGDTLLVLDIGDFELALRSAKNRVNAAQAQLRQRRDDENRYQRLASTGAV 134

Query: 134 -------APAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVG 186
                  +   +   +A   AA+      +    +S L A  DG++    A+   VVA G
Sbjct: 135 SRQIFDQSATNLRVAEAELAAAQSDASQIENRRTYSVLKADGDGIITDVRADRGQVVAEG 194

Query: 187 TPVFEMQDNRHIEVSVDLPES-------AALSIPLGPELQAEAELVIADLRLPLRYKEHS 239
             V  +  +   E  V+LPE+        AL+ P G   QA    VIA LR      E S
Sbjct: 195 QIVARLAHDGAREAIVNLPENQRDQAAQKALAFPFGAPDQA----VIATLR------ELS 244

Query: 240 TQPREGARTY--RLVLQGEPPEDFNLLPGMAMRVRLERPAQ-PETDNDGFRLPLSALQTG 296
                  RTY  R VL G   + F L  G  + VRL+   Q P+T     R+P+ ALQ  
Sbjct: 245 ASADPTTRTYRARYVLHG-AVDRFAL--GSTITVRLQGNGQAPQT-----RVPIGALQDS 296

Query: 297 SDGKHFIWQAADGRARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPI 353
             G       AD +     V +  +  ++AL+       QL I+  G   LH    +
Sbjct: 297 GQGTGVWLIGADDKVSFAPVNVASLGQEEALLDSGVTPGQL-IVALGAHLLHSGDAV 352