Pairwise Alignments

Query, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 371 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (248), Expect = 8e-26
 Identities = 85/328 (25%), Positives = 149/328 (45%), Gaps = 34/328 (10%)

Query: 26  GCSSE-AEPAPEP---PRVALVEPLRPAESKAEALRFSGVVQSVTSTQLSFEVSGRIERI 81
           GC  E +  AP+    P+V+    +R      E + F+G +++  +T + FE++G+I+ +
Sbjct: 24  GCQQEESTSAPDSEHFPKVSSQRLIRSTNYDTEQV-FTGSIRAGNTTAIGFELAGKIKHL 82

Query: 82  LIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEAD-------LARKRTLLAEGILA 134
            +D G  V++G  LAQLD +    + RE +A L Q  AD       L R + L  +G  +
Sbjct: 83  AVDSGNHVKQGDLLAQLDTSLLEAEKRELQASLAQNRADRELAQSTLKRSQALKQQGYAS 142

Query: 135 PAAIE-------ALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVGT 187
              ++       +LQA     R A ++    I  STL APFDG++A+R      VVA+G 
Sbjct: 143 AQQLDELKGQLSSLQAAEQRLRAAIEANALRIAKSTLVAPFDGIIAKRNNNLGEVVALGA 202

Query: 188 PVFEMQDNRHIEVSVDLPESAALSIPLGPELQAEAELVIADLRLPLRYKEHSTQPREGAR 247
           P+F +  + + + +V +P      + L   LQ   +L +     P               
Sbjct: 203 PLFTLIQHNNPQATVGVP------VGLAQSLQDSQQLTLTVKETPYLATVAGIGAEVNPV 256

Query: 248 TYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDGKHFIWQAA 307
           T  + ++   P D  ++ G    +   +      D  GF +P+S+L  G  G   ++   
Sbjct: 257 TRTVPVRLTLPTDAKVINGELAYLHYNK----TVDTAGFWVPISSLTDGLRGLWNLYVLV 312

Query: 308 DGRARRLAVELQQVE-----GDQALIRG 330
           + +  +  +E + +E     GDQA I+G
Sbjct: 313 EQQPDQYLIERRDIEILYTRGDQAFIQG 340