Pairwise Alignments

Query, 456 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (276), Expect = 9e-29
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 293 AGRDVLTRLLNRKFLPVVMAKEVLYARQSNNAFGVLAIDVDHFKRINDTYGHEAGDQVLQ 352
           A RD LT LLN   + V     +  A+++N++  +  +D+DHFK++NDTYGH  GD+VL 
Sbjct: 381 ASRDSLTGLLNHTQILVAARHCINLAKRANSSVCIAMLDLDHFKQVNDTYGHSGGDKVLL 440

Query: 353 QVGALLASNTRGGDYAFRLGGEEFLLVLVDIDASKALAAAEKLRERIAREHFRLSSGDVL 412
               LL  + R  D+  R GGEEF+LV+ D+ A   +A    +RE  +   F +  G   
Sbjct: 441 AFAHLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVIAKVNAIRESFSNIVF-VEEGAEF 499

Query: 413 QVTVSVGMAVHDGHPDYERLLQQADRALYQAKNGGRNRCV 452
           +VT+S G+A      +++  L  AD+ LY+AK  GRNR +
Sbjct: 500 KVTLSGGLAFSTECHEFQECLLLADKNLYEAKRTGRNRII 539