Pairwise Alignments

Query, 854 a.a., ATP-dependent chaperone ClpB from Pseudomonas stutzeri RCH2

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  524 bits (1350), Expect = e-153
 Identities = 315/870 (36%), Positives = 498/870 (57%), Gaps = 34/870 (3%)

Query: 3   IDRLTSKLQLALSDAQSIAVGLDHPAIEPLHLMQALLEQQGGSIKPLLMQVGFDIAALRQ 62
           I +L ++ +LAL  A S+ +   HP +   + +  LL+     ++ +L Q G ++  ++Q
Sbjct: 10  IAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQ 69

Query: 63  ALTKELDQLPKLQNPTGDMNLSQDLARLLNQADRLAQQKGDQY-ISSELVLLAAL---DS 118
           A+     +   L         S  L  LL +A  L+  + +Q  + S  + LAAL   D 
Sbjct: 70  AIASTYSREQVLDTYPA---FSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADR 126

Query: 119 NTRLGKLLLAQGVSKKALENAI-----NNLRGGDAVNDPNAEESRQA-----LDKYTVDM 168
                 + L +G++++ L+        ++     A  D NA    QA     L ++  ++
Sbjct: 127 YLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKNAANPLQAAAETPLGRFCTNV 186

Query: 169 TKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEV 228
           T++A +G+LDPV+ R++E+   + +L RR KNNP+++GE GVGK+A++EGLA R+V G+V
Sbjct: 187 TEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKV 246

Query: 229 PDGLKDKRLLALDMGSLIAGAKFRGEFEERLKAVLNDLSKQEGRVILFIDELHTMVGAGK 288
           P  L++  L +LD+G L AGA  +GEFE+RLK V++ + +    +ILFIDE HT++G+G 
Sbjct: 247 PTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGN 306

Query: 289 AEGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDTIA 348
            EG  DA N+LKPALARGEL  V ATT  EY++Y EKD AL RRFQ V +DEP+ +  + 
Sbjct: 307 QEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVD 366

Query: 349 ILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSK 408
           ILRGL   YE  H V ITD A+ AAA+LS RYI+ RQLPDKAID++D A +RI + + + 
Sbjct: 367 ILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTP 426

Query: 409 PEELDRLDRRLIQLKIEREALKKED---DEATKKRLAKLEDDIAKLAREYADLEEIWKSE 465
           P+ L  L+    Q ++E + L++      E   +RL  L +       E A L + W+ +
Sbjct: 427 PKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQQQ 486

Query: 466 KAEVQGSAQIQQKIEQAKAELEAARRKGDLARMAELQYGIIPDLERSLEMVDQHGKKENQ 525
           K+ V+    ++ ++ +     E       + R A      + +  ++L+ +D       +
Sbjct: 487 KSLVESIIALRAELMELSQAQEQDPDHLLVVRTA------LQEQYQALDAIDH----AER 536

Query: 526 LLRNKVTDEEIAEVVSKWTGIPVSKMLEGERDKLLRMEDMLHTRVIGQHEAVVAVSNAVR 585
           L+  +V  ++IAEV++ WTG+PV +M   E  K+  +  +L   + GQ  A+  +   + 
Sbjct: 537 LMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLL 596

Query: 586 RSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEAMIRIDMSEFMEKHSVAR 645
            +RA L  P RP G+FL +GP+GVGKTE    LAE L+  ++ +  I+MSE+ EKH+V+R
Sbjct: 597 TARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSR 656

Query: 646 LIGAPPGYVGYEEGGYLTEAVRRKPYSVVLMDEVEKAHPDVFNVLLQVLEDGRLTDSHGR 705
           LIG+PPGYVGY EGG LTEA+R+ PYSVVL+DEVEKAHP+V N+  Q  + G + D  GR
Sbjct: 657 LIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGR 716

Query: 706 TVDFKNTVIVMTSNLGSTQIQELVGDPGAQRAAVMDAVAHHFRPEFINRIDEVVVFDPLG 765
            +D +N V  +TSNLG   I +   +P     A+   +A  F+P  + R+ EV+ + PLG
Sbjct: 717 VIDCQNIVFFLTSNLGYQTIVDYADEPAKLDEALYPELAAFFKPALLARM-EVIPYLPLG 775

Query: 766 REQIAGIADIQLGRLRKRLAER-ELSLELSQEAMDKLIAVGYDPVYGARPLKRAIQRWIE 824
           +E +A I   +L RL K    R    + + +  +D++++       GAR L+  I+  + 
Sbjct: 776 KEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLL 835

Query: 825 NPLAQQILS--GQFAPGSSVKARVEGEQIV 852
            P++  +L+   + AP   ++   E  + +
Sbjct: 836 PPVSLALLNKLAERAPVERIRLAAEAGEFI 865