Pairwise Alignments

Query, 375 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (287), Expect = 2e-30
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 27/317 (8%)

Query: 65  EVPFDLGGQRLDQVAAQLFSEHSRSRLAAWIKDGLLTVDGAVLRPRDTVHAGAVLEL--- 121
           ++  D+ GQR+D           +S +   ++ G + V+   ++    + AG V+ +   
Sbjct: 12  DIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPV 71

Query: 122 -----NAEQQAQGEWVAQDIPLE--IVYEDDQILVIDKPAGLVVHPAAGHADGTL--LNA 172
                  E       +++   LE  IVYEDD +L+++KP+G  VH  +G   G +  L A
Sbjct: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRA 131

Query: 173 LLHHVPGLINVPRAGIVHRLDKDTTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGV 232
           L      L       +VHR+D+DT+G+++VAK   A   L  Q + ++V + Y A+V+G 
Sbjct: 132 LRPQARFL------ELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGH 185

Query: 233 IITG-GTIDAPIGRHGQQRQRMAVVEGGKPAVSHYRVLERFRSHTHVRVKLETGRTHQIR 291
                  ++AP+ ++ +    + V   GKP+ + +R+LE+F   T V+    TGRTHQIR
Sbjct: 186 WDAECKVVNAPLLKN-EVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIR 244

Query: 292 VHMPHLGYPLVGDPLYAGRFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKW 351
           VH  ++G+P+  D  Y  R      A   +        R  LHA  ++  HP + ++++ 
Sbjct: 245 VHTQYMGHPIAWDDRYGDRRFDAYTAQFGI-------ERLFLHAANIQFVHPASEKKLEI 297

Query: 352 ESPLPDDFVWLLTLLQQ 368
            +PL       LT ++Q
Sbjct: 298 HAPLEAHLEQALTKMRQ 314