Pairwise Alignments

Query, 375 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

Subject, 313 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  210 bits (534), Expect = 5e-59
 Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 21/313 (6%)

Query: 69  DLGGQRLDQVAAQLFSEHSRSRLAAWIKDGLLTVDGAVL-RPRDTVHAGAVLELNAEQQA 127
           ++  +RLD+  AQ +   SR+RL   I  G L V+G V  + R     G  LEL      
Sbjct: 11  EVPSERLDRWLAQQWPHLSRARLQKLIAAGQLRVNGEVCDQKRWQPRLGDRLELEMPPTE 70

Query: 128 QGEWVAQDIPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHH----VPGLINV 183
                 ++IPL+I+YED  +L+++K  G+VVHPAAGH  GTL++ALL H    + G+   
Sbjct: 71  AIALAPEEIPLDILYEDADLLIVNKAVGMVVHPAAGHDTGTLVHALLAHCGDSLTGIGGE 130

Query: 184 PRAGIVHRLDKDTTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIIT-GGTIDAP 242
            R GIVHRLDKDTTG MVVAKT  A   L +Q++ ++  R Y  +V G      G ++ P
Sbjct: 131 QRPGIVHRLDKDTTGAMVVAKTEAALLSLQDQIRQKTAQREYLGVVFGSPRQDSGQVEEP 190

Query: 243 IGRHGQQRQRMAVV---EGGKPAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMPHLGY 299
           IGRH + R+RMAVV    GG+ A++H++V ER  ++  +  +L TGRTHQIRVH  H+G+
Sbjct: 191 IGRHLRDRKRMAVVPIERGGRWALTHWQVRERLGNYALLHYRLATGRTHQIRVHSHHMGH 250

Query: 300 PLVGDPLYAGRFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKWESPLPDDF 359
           PLVGDPLY            +L   L+    QALHA  L L HP TG+ +  E+PLP +F
Sbjct: 251 PLVGDPLYGN--------GRSLGVNLQ---GQALHAWRLSLQHPRTGEVIAVEAPLPAEF 299

Query: 360 VWLLTLLQQDREA 372
             LL +L +DR A
Sbjct: 300 QRLLRVL-RDRSA 311