Pairwise Alignments

Query, 720 a.a., His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. from Pseudomonas stutzeri RCH2

Subject, 1639 a.a., chemotaxis protein CheY from Burkholderia phytofirmans PsJN

 Score =  282 bits (722), Expect = 8e-80
 Identities = 176/407 (43%), Positives = 244/407 (59%), Gaps = 41/407 (10%)

Query: 308  RERTLALQQSEAERQMTEQALLQAQRLEAVGKLTGGIAHDFNNMLQIIGGNLQLLRRSLG 367
            R+ T   + +EA R   E+AL  AQ++EA+GKLTGG+AHDFNN+LQ+IGGNLQLL + + 
Sbjct: 1092 RDVTADKETTEALRH-AEEALRMAQKMEAIGKLTGGVAHDFNNLLQVIGGNLQLLAKDVA 1150

Query: 368  SDETAARRLDSAVSGVEKGARLASQLLAFASRQPLLPQQVHLPDLLEQMHELLNGALGSA 427
              E   +R+ +A++GV +GA LASQLLAF  RQPL P+ V+L   +  + ++L  ALG  
Sbjct: 1151 GSEKPEQRVRNALAGVARGANLASQLLAFGRRQPLAPKVVNLGRFVRGLDDMLRRALGDG 1210

Query: 428  VQLELQVLGRPWPVFVDVGNLQSVVLNLAANARDAMSGGGRVVLRLENRLL-------GA 480
            V++E  V G  W   VD   +++ +LNLA NARDAMSG G++ +   N  L        A
Sbjct: 1211 VEIETIVSGGLWNTLVDPFQVENALLNLAINARDAMSGHGKLTIEAGNAALDDAYAKRNA 1270

Query: 481  DVPVGQGGGYVLLSVIDEGSGMTEDVRARAFEPFFTTKQNSNASGLGLSMVYGFVKQSGG 540
            +V  GQ   YV+L+V D G+GM+ +VR R FEPFFTTK     +GLGLSMVYGFVKQSGG
Sbjct: 1271 EVTPGQ---YVMLAVTDTGAGMSPEVRERVFEPFFTTKAEGQGTGLGLSMVYGFVKQSGG 1327

Query: 541  FVTLESGEQGGTAVHVHLPRHVENEPQLPGQGGDGAVESIQDDASRSAPESGADSVDGSL 600
             V + S E  GT + ++LPR V  E  L             +    + P  G     G+ 
Sbjct: 1328 HVKIYSEEGHGTTIRIYLPR-VRQEEDL-------------ETNIEAGPAKG-----GTE 1368

Query: 601  RILFVEDDPTLRMLTGEVMMELGHEVVASETAEEALEILER-QPFDVLLTDVGLAG-MSG 658
             IL VEDD  +R    E++ +LG+ V+ ++ A+ AL I+E   P D+L TDV + G +  
Sbjct: 1369 TILAVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLRS 1428

Query: 659  IDLAREAGTRLPRLSLVIASGYPVNA------SDVGLDRLRTMLKPY 699
             +LAR+A  RLP ++++  SGY  NA       D G++ L    KPY
Sbjct: 1429 TELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLS---KPY 1472



 Score = 79.0 bits (193), Expect = 2e-18
 Identities = 107/408 (26%), Positives = 174/408 (42%), Gaps = 58/408 (14%)

Query: 299 YRDHLEELVRERTLALQQSEAERQMTEQALLQAQRLEAVGKLTGGIAHDFNNMLQIIGGN 358
           YR  L  +  +   A+  ++A  +   +A   A+   A       I+H+F   L ++ G 
Sbjct: 322 YRSFLNLVAGQIGAAIGYAQAYEEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGP 381

Query: 359 LQ-LLRR-----SLGSDETAARRLDSAVSGV--EKGARL---ASQLLAF----ASRQPLL 403
           L+ LL R     S  + +T +   D A+  +    G RL    + LL F    A R  + 
Sbjct: 382 LEELLARPQPGPSGNNAQTRSDIDDRALIEITHRNGLRLLKLVNALLDFSRIEAGRIEIH 441

Query: 404 PQQVHLPDLLEQMHELLNGALGSA-VQLELQVLGRPWPVFVDVGNLQSVVLNLAANA-RD 461
            Q   +     ++  L   A+ +A ++LE+++   P  V +D    + VV+NL +NA + 
Sbjct: 442 TQPTDIAAFTAELASLFQSAMEAAGLRLEVEIPATPVVVQLDREMWEKVVMNLLSNAYKF 501

Query: 462 AMSGGGRVVLRLENRLLGADVPVGQGGGYVLLSVIDEGSGMTEDVRARAFEPFFTTK--- 518
              G  RV +R                G V +SV D G G+ E+   R FE F       
Sbjct: 502 TFFGTVRVAVRAVT-------------GGVEVSVTDSGIGVAEEEVPRLFERFHRVAGAP 548

Query: 519 -QNSNASGLGLSMVYGFVKQSGGFVTLESGEQGGTAVHVHLPRH-VENEPQLPGQGGDGA 576
            ++   SG+GL+MV   VK  GG V ++S    G    V LP   V++E +  G     +
Sbjct: 549 GRSVEGSGIGLAMVQELVKLHGGTVRVDSVLGEGACFTVSLPSGAVQSEREDAGVHATMS 608

Query: 577 --VESIQDDASRSAPESGADSVDGS-------------------LRILFVEDDPTLRMLT 615
               S  D A R +PE+  + VDG+                    R+L V+D+  LR   
Sbjct: 609 KHARSYVDAALRWSPEN--EIVDGASIETASADETSPEAAPAAAARLLVVDDNADLREYM 666

Query: 616 GEVMMELGHEVVASETAEEALEILERQPFDVLLTDVGLAGMSGIDLAR 663
             ++   GH+V  +   + ALE    +  D++L+DV +  + G  L R
Sbjct: 667 SRILRAAGHDVRLASDGQAALEAARAEAPDLVLSDVMMPRLDGFGLLR 714



 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 592  GADS--VDGSLRILFVEDDPTLRMLTGEVMMELGHEVVASETAEEALEILERQPFDVLLT 649
            GADS      LRIL VEDD  +R+ T E++     +++ +E   +A +IL      V+LT
Sbjct: 1513 GADSFVTQTRLRILLVEDDELIRVSTAELLRTFDFDILEAEGEHDAKQILSEHAISVMLT 1572

Query: 650  DVGLAGMSGIDLAREAGTRLPRLSLVIASGYPV---NASDVGLDRLRTMLKPYD 700
            DVGLAG SG+DLA +     P L ++  +GY +    A    L     M KPYD
Sbjct: 1573 DVGLAGKSGVDLALDVCRERPDLRVIFLTGYDLVLTPAQRAVLPHAMLMRKPYD 1626



 Score = 31.6 bits (70), Expect = 3e-04
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 197 NDAYRQVIG--HRQLLGKTIRDGLPEIEGQVLIGLLDDVYRTGQPYIGKRVSLFLKRQPE 254
           ND Y+ +IG  H   LG+  R    EI   +   LLD      +    ++  L ++R   
Sbjct: 81  NDPYKSIIGGKHPVALGQPTRVVWREIWTDIE-PLLDTALAGAEGIFVEQKLLIMERNGF 139

Query: 255 REPEEVILDFVLQPIVENDGKVIGIFVQGQDVTEQQRNEMEL 296
             PEE    F   PI   DG+  GI     D T Q   E +L
Sbjct: 140 --PEETYYTFSYSPIPGEDGEPGGIICANSDNTAQVVGERQL 179