Pairwise Alignments

Query, 833 a.a., ribonuclease R from Pseudomonas stutzeri RCH2

Subject, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

 Score =  181 bits (460), Expect = 9e-50
 Identities = 156/581 (26%), Positives = 264/581 (45%), Gaps = 49/581 (8%)

Query: 91  GRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDGDRCLARVAGLDRRGRREGAIVEVIS 150
           G +     GFGFL   D     F+ P  M+    GD+ +A +   + R   E +  E+I 
Sbjct: 24  GTIKASDKGFGFL-EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80

Query: 151 RAHESIVGRYHIESDVGFVIPDNPKIQQEVLVTPGRA----LDAKPGQFVEVKITHWPTQ 206
           ++    +GR  +      V PD+P++++  L    +      D + G +V   +   P +
Sbjct: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140

Query: 207 RFQPQGDIVEVIGNYMAPGMEID---VALRSFDIPHVWPEAVLKEASRLKPEVEEKDKHK 263
                G  V++         +I    V L   D+P+  P  +  +  +LK + +      
Sbjct: 141 G--DDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI--DDWQLKDDADLV---- 192

Query: 264 RVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGFRLYVAIADVSHYVKVDSALDK 323
           R DL  LPFVTIDGE  +D DDA+Y ++     L  G F L +AIAD + Y+  +  +DK
Sbjct: 193 REDLTALPFVTIDGESTKDMDDALYAQQ-----LPNGDFALTIAIADPTAYITPEDEMDK 247

Query: 324 ESVVRGNSVYFPERVVPMLPEELSNGLCSLNPQVDRLAMVCEITLSKSGKM-TDYQFYEA 382
            +  RG ++Y P R +PMLP +L++ LCSL     R A+ C +T+ K G +  D +F+ A
Sbjct: 248 VARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAA 307

Query: 383 VIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPHLKQLYSLYKVLLKARHTRGAID 442
            I SHARL Y+ VS  LE   S+E  + S E A+V   ++ LY+  +     R T   + 
Sbjct: 308 NIKSHARLVYDHVSDWLE-TGSSEQWQPSEEIAQV---VRDLYAFSQARANWRETHAVVF 363

Query: 443 FETQETRIVFGSDRKIAEIKPTERNDAHKLIEECMLCANVATAAFLQKHEIPALYRVHDA 502
            +  + R    +D  +  I    R  A++L+EE M+ AN+     LQ      ++  H  
Sbjct: 364 PDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAG 423

Query: 503 PPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEQIQGRPDFHVIQTVMLRSLSQAV 562
              E+   +   +   G      +   T + + AL   +  +   ++   +  +  S + 
Sbjct: 424 FKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR-KYQSYSE 482

Query: 563 YSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVIRSRRDTPHVRREGATSMPKAR 622
              +   HF +  + YA +TSPIR+Y D++ HR +++ I                + KA 
Sbjct: 483 IGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI----------------LGKAP 526

Query: 623 IYPYDEAALEQLGEQCSMTERRADEATRDVTNWLKCEFMKD 663
           +   DE     +GE+ ++  +    A R+V +WL    + D
Sbjct: 527 VQTPDET----VGEELALHRKHHKIAERNVADWLYARTLAD 563