Pairwise Alignments

Query, 833 a.a., ribonuclease R from Pseudomonas stutzeri RCH2

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  775 bits (2000), Expect = 0.0
 Identities = 415/834 (49%), Positives = 558/834 (66%), Gaps = 32/834 (3%)

Query: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQHLGERGSPAAREELVEEFGLVSEEDIEALR 60
           M+D   LDP A REA+ YDNPIPSRE IL+ L +   P  R +L E   L  EE  E LR
Sbjct: 1   MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR 60

Query: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSD---DLFLSPA 117
           RRLRAMERDGQL++TRR  YA  +KL++V G V GH+DG G++ P+   +   D+ L   
Sbjct: 61  RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH 120

Query: 118 QMRLVFDGDRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVIPDNPKIQ 177
           QMR +  GD  L + +G D+RGR+EG +V ++   +  IVGR+  E    +V+PD+ +I 
Sbjct: 121 QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH 180

Query: 178 QEVLVTPGRALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDI 237
            ++L+       A+ G  V ++IT   T+     G +VEV+G  MAPGME  +A+R+  I
Sbjct: 181 HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI 240

Query: 238 PHVWPEAVLKEASRLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKL 297
           PH WP  V ++ + L  EV E+ K  RVDLR LP VTIDGEDARDFDDAVYCE   G   
Sbjct: 241 PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG--- 297

Query: 298 LTGGFRLYVAIADVSHYVKVDSALDKESVVRGNSVYFPERVVPMLPEELSNGLCSLNPQV 357
             GG+RL+VAIADVS+YV+ D+ALDKE++ RGNSVYFP +VVPMLPE LSNGLCSLNPQV
Sbjct: 298 --GGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQV 355

Query: 358 DRLAMVCEITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEV 417
           DRL MVCE+T+S++GK++ Y+ YEAV++SHARLTY KV  +LE       + L   Y  +
Sbjct: 356 DRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILE-----GDEELRERYKAL 410

Query: 418 LPHLKQLYSLYKVLLKARHTRGAIDFETQETRIVFGSDRKIAEIKPTERNDAHKLIEECM 477
           +PHL++L+ +Y+VL  AR  RGAI+FET ET+ +F + RKI  I+P  RNDAHKLIEECM
Sbjct: 411 VPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECM 470

Query: 478 LCANVATAAFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQAL 537
           + AN+A+A+ ++K +  ALYRVH+ P  ER    R FLGELGL L  G E P+P DY  L
Sbjct: 471 ILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLE-PSPTDYANL 529

Query: 538 LEQIQGRPDFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAI 597
           ++QI  RPD  +IQT++LRS+ QAVY+A+N GHFGL  + YAHFTSPIRRYPDLL+HRAI
Sbjct: 530 MKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAI 589

Query: 598 RSVIRSRRDTPHVRREGATSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVTNWLK 657
           + +I  +      R +   +      Y +D+  ++  GEQCSMTERRAD+ATR+V++WLK
Sbjct: 590 KYLIAKQEG----RNQDRWTPTGGYHYSFDD--MDFYGEQCSMTERRADDATREVSDWLK 643

Query: 658 CEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGER 717
           CE+M+D VGE   GV+  VT FG FV LT+++++GLVH++ +  DYYH+DP+  RL GE 
Sbjct: 644 CEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGES 703

Query: 718 SGRSFRLGDSVEVRVMRVDLDERKIDFELIAGGTKSAPGQRDGEGRGREPGNADVRKSRE 777
            G  +RLGD+V+V+V+ V+LD+R+IDFEL+    K       G+G+  +    + R   +
Sbjct: 704 FGAIYRLGDAVKVKVLAVNLDDRQIDFELVETSRKLR-----GQGKTAKKRADEARAKAQ 758

Query: 778 LKKALLEEAKGGRKGKGEKSTGSKSR-SGSAKPKSAAKSGDKPSAASGGPRKRK 830
            KK   E A  G  GK    +  K +   + +P S  +S  K + A   P+KRK
Sbjct: 759 GKK---EAATKGACGKSPTKSELKPQVEATRRPDSEGRSKPKKTKA---PKKRK 806