Pairwise Alignments

Query, 599 a.a., PAS fold. from Pseudomonas stutzeri RCH2

Subject, 973 a.a., sensory box histidine kinase, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 7/143 (4%)

Query: 440 AHPAGLLVGCLQDVTEQQRREARLEDAEAFTRGIIDALPLAIGVIDGNGRLITANQVWM- 498
           A   G ++G   D T    +  R   A A    I+D LP  + V+DG GR+   N  W+ 
Sbjct: 420 AETVGGMLGAALDRTATLLQHQR---AHAHIAAILDTLPAQVAVVDGTGRITHVNASWLH 476

Query: 499 --AGGNAPAALSGCKSLDYLARCRAATGDGFDAGARLADGIEALLAGTGDPFVFSYEHGS 556
             A  + P  +      DYL+   A T D   AG   A  +  +LAG  +     YE  +
Sbjct: 477 AAADMSLPEPMRCLPGADYLSALDAKTPDIPSAG-DAATLLREILAGRREGGSLEYEVMA 535

Query: 557 DAQRRVYQSSALLMSTLTRRVLV 579
           D +R      A LM  LT  VL+
Sbjct: 536 DGRRHFMLQLAPLMPPLTGAVLM 558



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 189 LIMPLPGAGEATSMLVLSWDVTEVRQRACQLQTTNDELTTLLEHLDDGFCRLDRSWRLVE 248
           L+ PL GA      +++  DVT +R+    L  +      LL+ + +G    D + R+  
Sbjct: 548 LMPPLTGA------VLMRSDVTALRRAEADLARSEVRYRMLLDTMQEGLLFTDAAGRMTY 601

Query: 249 LNGRAVALLQRPRSELLGTLLWDLL-PQARGA 279
           +NG   A+++     L G    DL+ P++R A
Sbjct: 602 INGPFCAMVEHDADALAGREALDLVAPESRQA 633



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 181 GVAKWWDVLIMPLPGAGEA---------TSMLVLSWDVTEVRQRACQLQTTNDELTTLLE 231
           G  + W     PLP    A         +S L     V   R+RA       ++  ++ +
Sbjct: 101 GSIELWRTPAAPLPPRAYALLEDCGQIISSCLQQIVTVAATRERA-------EQYRSIFD 153

Query: 232 HLDDGFCRLDRSWRLVELNGRAVALLQRPRSELLGTLLWDLLPQARGAELGVALQEV 288
           ++ +     D    ++++N  A+ LL      L G    DLLP    AEL   +  +
Sbjct: 154 YVTEALVLYDLEGIILDINAAALRLLGADHERLRGRWFGDLLPPDDAAELAAHINRI 210



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 452 DVTEQQRREARLEDAEAFTRGIIDALPLAIGVIDGNGRLITANQVWMAGGNAPA-ALSGC 510
           DVT  +R EA L  +E   R ++D +   +   D  GR+   N  + A     A AL+G 
Sbjct: 561 DVTALRRAEADLARSEVRYRMLLDTMQEGLLFTDAAGRMTYINGPFCAMVEHDADALAGR 620

Query: 511 KSLDYLA 517
           ++LD +A
Sbjct: 621 EALDLVA 627