Pairwise Alignments

Query, 679 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 487 a.a., histidine kinase from Herbaspirillum seropedicae SmR1

 Score =  164 bits (414), Expect = 1e-44
 Identities = 107/242 (44%), Positives = 142/242 (58%), Gaps = 7/242 (2%)

Query: 437 GDAEVQLLIRDVSQAEQLRRDLEDANQRLQHLSQRLIEVQEIERREVARDLHDDVGQHLT 496
           GD    L I DV++ EQ RRDLE A QR Q LS R+IEVQE ER+ +AR LHDDVGQ LT
Sbjct: 242 GDMVAGLAI-DVTEREQSRRDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLT 300

Query: 497 GLKLHLQRLIRRQAGDSEFERLSQPLVASMDAALAKVRSLSLSLHPLQLETLGLEAAVRW 556
            LK++L+ +  ++ G  E   L Q  +  + A LA+VRSLSL L P QL+ LGL AA+R 
Sbjct: 301 ALKINLETI--KKMGSLEGPSL-QNGIDIVTAVLAQVRSLSLDLRPPQLDNLGLIAALRS 357

Query: 557 HLQHFLEASGTCWELEVRGSTTEIPPGRAVAAFRLVQEAVNNVARHARARTVRILMVCDE 616
           +++   + +      E  G   ++       AFR+VQEAV N+ RHAR + + + +    
Sbjct: 358 YVEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQH 417

Query: 617 HELRLEILDDGRGFDVPEALQGA---QSLGLTSMHERVASFGGDLRISSLPGMGTRITAL 673
            ++ L I DDGRGFD+  A   A    S GL +M ER    GG + I+S PG GT I   
Sbjct: 418 DQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAGTEIVMH 477

Query: 674 LP 675
           LP
Sbjct: 478 LP 479