Pairwise Alignments

Query, 679 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 464 a.a., sensor histidine kinase from Herbaspirillum seropedicae SmR1

 Score =  112 bits (279), Expect = 5e-29
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 11/224 (4%)

Query: 461 ANQRLQHLSQRLIEVQEIERREVARDLHDDVGQHLTGLKLHLQRLIRRQAGDSEFERLS- 519
           A+ +L+ L+QR++  QE ER  ++RDLHD + Q L  +KL ++  + R  G  E    + 
Sbjct: 231 ADAKLRQLAQRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATAR 290

Query: 520 ---QPLVASMDAALAKVRSLSLSLHPLQLETLGLEAAVRWHLQHFLEASGTCWELEVRGS 576
              +     ++  LA+VR +S  L P  L+ LGL AA+      + +A+G   E+     
Sbjct: 291 AGFEKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQ 350

Query: 577 T-----TEIPPGRAVAAFRLVQEAVNNVARHARARTVRILMVCDEHELRLEILDDGRGFD 631
                   +P       FR+ QEA+ N+ARHA A  +++ +    + L L++ D+G GFD
Sbjct: 351 AQADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFD 410

Query: 632 VPEALQGAQ-SLGLTSMHERVASFGGDLRISSLPGMGTRITALL 674
           + +    ++  +GL +M ER+ + GG+L I S P  GT I+A++
Sbjct: 411 LGQVDDHSRHGIGLRNMRERIEAVGGELGIDSSPA-GTSISAVI 453