Pairwise Alignments

Query, 748 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

Subject, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

 Score =  392 bits (1007), Expect = e-113
 Identities = 266/728 (36%), Positives = 386/728 (53%), Gaps = 52/728 (7%)

Query: 9   QLLLSFVEEARDLAKQAEEYLLQLEQTPTDEDAINGLFRAMHTLKGSAGLFSLTPLVNFT 68
           QL   F  E R+  +  E  LLQL+ +  D + +N +FRA H++KG AG F+L  +  FT
Sbjct: 7   QLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFT 66

Query: 69  HHLESLLMKVREGQQALTPVLLDLLLRGLDEINAMVELIDADSGELPVDEARH----AGL 124
           H +E+ L  +R  ++ LT   +D LL+  D I  M   +D+   E  +DEA      A L
Sbjct: 67  HAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNM---LDSREQETAIDEALKQQVGAEL 123

Query: 125 IAALTSHEVSPLIPLTV-IEPDACKAFGRLDKCANCDQEA-AWHISLRLQPEILANGFDP 182
            A L       ++     +  +   +    D  A  D  A  W I       +  +G DP
Sbjct: 124 QALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDP 183

Query: 183 ASFLRYLSRLGDILQLELIDDALPALADIDPESCYLGMEIDLCTTASKAEIEEVFEFIRE 242
              LR L  LG   Q+EL   ALP LA+IDPE CYL   I L    S+ ++ E+F+++ +
Sbjct: 184 LRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVED 243

Query: 243 FCTLRILPPNAALEDYLQLIHDLPETDQKIGRILVASGLLTELELDQALRLQAADAQQPR 302
            C L I P          ++ D             AS  + + +   A  LQ+    Q  
Sbjct: 244 ECDLHIAP----------ILSD------------EASAHVEDEQAAPAATLQSNPQTQVE 281

Query: 303 PLGSVLVEQGMVPAQGVNAALA--KQQTVRE--KRNQEHSQIRVAAHKLDELINLVGELV 358
           P+  V +     P   V   +A  K+    +  K +   S IRV   K+D LINLVGELV
Sbjct: 282 PVAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELV 341

Query: 359 ISAAGAQLRAQLKGDAACIESTQTVNLHVEQI-------REAALKLRMIEIGDTFNRFHR 411
           I+ +   +  +L  D + ++    +   + Q+       +E  L +RM+ +   F+RF R
Sbjct: 342 ITQS---MLTELGNDFS-MDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPR 397

Query: 412 VVRDVSQQLGKDIRLEIQGADTELDKAVIDRLADPLTHLVRNAIDHGIEPAEQRLAAGKP 471
           +VRD+  +LGK + L+IQG  TELDK V++R+ DPL HLVRN IDHG+E  + RLA GKP
Sbjct: 398 LVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKP 457

Query: 472 AEGHLRLDAYHESGMIVIEVADDGRGLNTQRIREKAIARGLIDAQ---ANLSDHDVQMLI 528
             G + L A+H+ G I++E++DDG G++  ++  KA+ +G+++ Q   ++L+D  +  LI
Sbjct: 458 ETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLI 517

Query: 529 FAAGFSTADNVSDLSGRGVGMDVVRSAIDALRGTIEIDSRPGAGCTFRIRLPLTLAIIDG 588
           FA GFSTA+ VSD+SGRGVGMDVVR  I+ L G IE+DS  G G  F I LPLTLAI+DG
Sbjct: 518 FAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDG 577

Query: 589 FLISLGDDYFVIPLDMVTECLELEADQLDGAAYG--YLDLRGRPLPCLSLAAHFKL-REA 645
            L+ + D  +VIPL  + E +++    +  AA G     LR   +P L L     + R  
Sbjct: 578 QLVKVADQVYVIPLLTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSG 637

Query: 646 PSKRRNIIVVSHGRQQAGLIVDHLHGELQTVIKPLGQLFQHLQGIGGSTILGSGQVALIL 705
             ++R I  V     + GL+VD L  + Q VIK L   +  + GI G+TILG G V+LIL
Sbjct: 638 SLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLIL 697

Query: 706 DIPSLFRH 713
           DIP L  H
Sbjct: 698 DIPGLIAH 705