Pairwise Alignments

Query, 748 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

Subject, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

 Score =  266 bits (679), Expect = 5e-75
 Identities = 152/394 (38%), Positives = 241/394 (61%), Gaps = 7/394 (1%)

Query: 322 ALAKQQTVREKRNQEHSQ-IRVAAHKLDELINLVGELVISAAGAQLRAQLKGDAACIEST 380
           A +K+Q   E  + + SQ +RV   KLD+L+NLVGE+VI+ A     A          + 
Sbjct: 529 ATSKKQA--ENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAV 586

Query: 381 QTVNLHVEQIREAALKLRMIEIGDTFNRFHRVVRDVSQQLGKDIRLEIQGADTELDKAVI 440
             +N+   +++E  + +RMI +   FNRF R VRD ++ L K+I  EI+G+D ELD+ V+
Sbjct: 587 GRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVL 646

Query: 441 DRLADPLTHLVRNAIDHGIEPAEQRLAAGKPAEGHLRLDAYHESGMIVIEVADDGRGLNT 500
           D LA+PLTHL+RN++DHGIE A++R+  GKP +G L+L A  +   + I + DDG+G++ 
Sbjct: 647 DELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDP 706

Query: 501 QRIREKAIARGLIDAQ--ANLSDHDVQMLIFAAGFSTADNVSDLSGRGVGMDVVRSAIDA 558
           + +R+KA  +GL   +    L+D++   +IF  GFSTA+ VSD+SGRGVGMDVVRS I++
Sbjct: 707 EAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIES 766

Query: 559 LRGTIEIDSRPGAGCTFRIRLPLTLAIIDGFLISLGDDYFVIPLDMVTECLELEADQLDG 618
           L G++ ++S  G G    + LPLT+AII   LI L +  + +PL  V + + +E +Q+  
Sbjct: 767 LGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKN 826

Query: 619 -AAYGYLDLRGRPLPCLSLAAHFKLRE-APSKRRNIIVVSHGRQQAGLIVDHLHGELQTV 676
                 +  R   LP + L         + S    ++VV   + + G+I+D + G  + V
Sbjct: 827 LEGQEAIIYRNHILPVIWLKDALNTSGFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIV 886

Query: 677 IKPLGQLFQHLQGIGGSTILGSGQVALILDIPSL 710
           +KPL  + +++ G+ G+TILG G+VALILD+ ++
Sbjct: 887 VKPLTGILKNINGLAGATILGDGRVALILDLNNI 920



 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 4/114 (3%)

Query: 5   QQWSQLLLSFVEEARDLAKQAEEYLLQLEQTPTD-EDAINGLFRAMHTLKGSAGLFSLTP 63
           +Q+ +L   F+ EA +  +   + +++LE  P D E  IN +FR+ HTLKGSA       
Sbjct: 5   EQYKEL---FMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEH 61

Query: 64  LVNFTHHLESLLMKVREGQQALTPVLLDLLLRGLDEINAMVELIDADSGELPVD 117
           + + THH+E +L  +R+G+  + P ++DLL + LD +  MV  +        VD
Sbjct: 62  ISSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVD 115