Pairwise Alignments

Query, 296 a.a., Geranylgeranyl pyrophosphate synthase from Pseudomonas stutzeri RCH2

Subject, 323 a.a., octaprenyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  111 bits (277), Expect = 2e-29
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 20/223 (8%)

Query: 38  YSVMNGGKRVRPLLVYAACEALNGDKASADGAACAVELIHAYSLVHDDLPAMDDDDLRRG 97
           Y +  GGKR+RPLL   + +AL    +    AA  +E IH  +L+HDD+  +D+ DLRRG
Sbjct: 38  YIISGGGKRLRPLLAVLSAKALGYQGSHHTTAAAFIEFIHTATLLHDDV--VDESDLRRG 95

Query: 98  QPTTHKAFDEACAILAGDGLQSLAFEAMAQAAHNPQDATLRLRMFAVLARAAGPAGMVGG 157
           + T + AF  A ++L GD + + +F+ M +         L+L   AV   A G       
Sbjct: 96  KATANAAFGNAASVLVGDFIYTRSFQMMTELGSMK---ILKLMSDAVNVIAEGEVQ---- 148

Query: 158 QAIDLGSVGLKLDRDALELMHRH----KTGALIEASVQLGALASGRADADNLASLSQYAR 213
           Q ++        D D  E  +      KT  L EA+ Q+GA+    +    LA +  Y +
Sbjct: 149 QLMNCN------DPDTTEASYMQVIYSKTARLFEAATQIGAILCDASPEVELA-MQNYGK 201

Query: 214 AIGLAFQVQDDILDVESDTATLGKHQGADIARDKPTYPALLGM 256
            +G AFQ+ DD++D  SD   +GK+ G D+A  KPT P L  M
Sbjct: 202 YLGTAFQLIDDVMDYTSDGDEMGKNVGDDLAEGKPTLPLLYAM 244