Pairwise Alignments

Query, 841 a.a., ATP-dependent helicase HrpB from Pseudomonas stutzeri RCH2

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score =  252 bits (643), Expect = 1e-70
 Identities = 156/447 (34%), Positives = 241/447 (53%), Gaps = 17/447 (3%)

Query: 2   SLLPIESVLPALRDALSARNEVVLEAAPGAGKTTRVPIALLEEPWLADQTIVMLEPRRLA 61
           +LLP+      +  A++    V++    G+GKTT++P    E        I   +PRRLA
Sbjct: 85  ALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLA 144

Query: 62  ARAAAERLASELGESVGQTVGYRIRLESKVGPQTRIEVVTEGILTRRLQDDPALDGVGLL 121
           AR+ A R+A E+   +G  VGY++R   ++  QT+I+++T+GIL   +Q+D  L+    +
Sbjct: 145 ARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTI 204

Query: 122 IFDEYHLRSLDADLALALCLNGRELLRDEPPLKVLLMSATLEGERLSRLLDEAPVVRSEG 181
           I DE H RSL+ D  L      ++LL   P LKV++ SAT++ ER S+    AP++   G
Sbjct: 205 IIDEAHERSLNIDFILGYL---KQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSG 261

Query: 182 RMYPVEQRW----GRPSQIGEALEPRVVQTMLQALADEP-GSLLVFLPGQAEIRRVAEQL 236
           R YPVE R+    G      +  +   +   +  L DE  G +L+F+ G+ EIR  A+ L
Sbjct: 262 RTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADAL 321

Query: 237 AERLAGRSEILLCPLHGELDLAAQRAAIEPAPAGKRKVVLATNIAETSLTIDGVRVVVDA 296
           ++R    +EI+  PL+  L    Q    +P     R++VLATN+AETSLT+ G++ V+D 
Sbjct: 322 SKRNLRDTEIV--PLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDP 377

Query: 297 GLERVPRFDPASGMTRLDTQRISRSSATQRAGRAGRLQPGACYRLWSEAQHEQLAAHGSA 356
           G  R+ R+   + + RL  + IS++SA QR GR GR + G C RL+SE            
Sbjct: 378 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDP 437

Query: 357 EILQADLAGLALQLARWGIGDPNELAWLDPPPTAAYAQGRDLLQRLGALADD-----GNL 411
           EIL+ +LA + LQ+   G+GD     +++ P       G  LL+ LGA+ D        L
Sbjct: 438 EILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRL 497

Query: 412 TRHGQAMAELPAHPRIAHLLLRGHALG 438
           T  G+ +A LP  PR+A ++L    LG
Sbjct: 498 TESGKQLARLPIDPRLARMVLEASKLG 524