Pairwise Alignments

Query, 841 a.a., ATP-dependent helicase HrpB from Pseudomonas stutzeri RCH2

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  624 bits (1608), Expect = 0.0
 Identities = 373/838 (44%), Positives = 513/838 (61%), Gaps = 24/838 (2%)

Query: 1   MSLLPIESVLPALRDALSARNEVVLEAAPGAGKTTRVPIALLEEPWLADQTIVMLEPRRL 60
           MS LPI  V+P L   ++   +++L+AAPGAGK+T  P+ LL+      + I+MLEPRRL
Sbjct: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGK-IIMLEPRRL 59

Query: 61  AARAAAERLASELGESVGQTVGYRIRLESKVGPQTRIEVVTEGILTRRLQDDPALDGVGL 120
           AAR  A  LA +LGE VGQ VGYR+R E++V   T++E+VTEGI+TR LQ+DP LDGV +
Sbjct: 60  AARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDV 119

Query: 121 LIFDEYHLRSLDADLALALCLNGRELLRDEPPLKVLLMSATLEGERLSRLLDEAPVVRSE 180
           LIFDE+H RS+ AD ALAL L  +  LR++  LK+++MSATL+ + L  LL +A  V S+
Sbjct: 120 LIFDEFHERSIHADTALALALEVQSALRED--LKIVVMSATLDQQALQNLLPQASYVESQ 177

Query: 181 GRMYPVEQRWGRPSQIGEALEPRVVQTMLQALADEPGSLLVFLPGQAEIRRVAEQLAERL 240
           GR +P+E R+ +P +  E L   + + +   L  E GSLL FLPG A I ++ EQL++  
Sbjct: 178 GRGFPIEIRY-QPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA 236

Query: 241 AGRSEILLCPLHGELDLAAQRAAIEPAPAGKRKVVLATNIAETSLTIDGVRVVVDAGLER 300
              SE+ +CPL+G+++ AAQ+ AI P  AG+RKVVLATNIAETSLTI+G+R+V+D+GLER
Sbjct: 237 ---SEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLER 293

Query: 301 VPRFDPASGMTRLDTQRISRSSATQRAGRAGRLQPGACYRLWSEAQHEQLAAHGSAEILQ 360
             RFD  +G+TRL+  RI++SSA QRAGRAGRL+PG C RL+SEAQ +Q       E+L 
Sbjct: 294 SARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLH 353

Query: 361 ADLAGLALQLARWGIGDPNELAWLDPPPTAAYAQGRDLLQRLGALADDGNLTRHGQAMAE 420
            DLA LAL+LA+WG   P++LAWL+ PP++A+AQ + LLQRLG L     +T  G+    
Sbjct: 354 TDLAPLALELAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHL 412

Query: 421 LPAHPRIAHLLLRGHALGLGGLACDLAALLGERDILRGGGADLHSRLALLAGNDKAARGA 480
           L   PRIA +LL    LG   L   LA  +   +  R      HS      G     +  
Sbjct: 413 LGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQVIDVQHSLHRWQQGRHPKQKLL 472

Query: 481 RGGVQRARQLARQFRSYLRGPASEPVADPDHPRWLGCLLAFAYPDRIAQQRRAGGADYRL 540
              +QRA+ LA +  +     + +         WL  +   A+PDRIAQQR      + L
Sbjct: 473 ---IQRAQSLAHKLDTAFSLSSVDSA-------WLPLVACLAFPDRIAQQRGQQTGQFLL 522

Query: 541 ANGRAATFGEPDALMKEPWLVIADLGSRQGQREERIYLAADLDPALFDGPLAEQVRCQDL 600
           ANG  A     D L    +LV  DL   Q Q  + I+ A +LD    +  L   +   + 
Sbjct: 523 ANGHGAWLAVEDRLSAADYLVALDLMRGQTQASQ-IFSALELDIHALERVLPALISRVEQ 581

Query: 601 LDWEEREGVLRAERQVKVGELVLAREALAELDDEARSRALLGLVRRKGLELLPWSAELRQ 660
           +DW+E+ G L AE Q ++ +LVL RE L E D +  ++ALL  VRRKGL +L WS +  +
Sbjct: 582 VDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASE 641

Query: 661 WQARVALLRRLDLADTGSSEWPDLSDAALLASLEEWLQPWLGKVSRLSHFANLDLAGILH 720
           W AR     R          WP L D  LLA LE WL+P+L  V+ +    ++ +   L 
Sbjct: 642 WLARA----RCAAEWLPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALK 697

Query: 721 GLLPWPLPQRLDELAPRTLEVPSGSRIRLDYSDEM-PVLAVRLQELFGLADTPRIAGGRQ 779
             L W L Q+LDE  P    +P+G+  ++ Y   M P L+VR+QE+FG   +PR+A G +
Sbjct: 698 HYLGWELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTR 757

Query: 780 GVKLHLLSPAQRPVQVTQDLASFWRNTYAEVKKDLRGRYPKHYWPEDPLVAQATARAK 837
            V + LLSPAQRP+QVT+DLASFW   Y EV+K+++GRYPKH WP+DP    AT++ K
Sbjct: 758 AVVMELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815