Pairwise Alignments

Query, 306 a.a., cation diffusion facilitator family transporter from Pseudomonas stutzeri RCH2

Subject, 302 a.a., cation-efflux pump FieF from Vibrio cholerae E7946 ATCC 55056

 Score = 76.6 bits (187), Expect = 7e-19
 Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 22/252 (8%)

Query: 20  AIGVNTVLTLAQVVGGILSGSLSLIADALHNLSDAASLVIALIARKIGRKPPDAFKTFGY 79
           A  V ++L + +V    ++GS+SL+A  + ++ D A+ V+ LI  +   +P D    FG+
Sbjct: 17  ATAVASLLLVVKVAAWWVTGSVSLLASLIDSVLDIAASVVNLIVLRFALQPADHEHAFGH 76

Query: 80  RRSETIAALINLVTLIIVGLYLIYEAIGRFFAPQPIEGWTV-VVVAGIALIVDVVTALL- 137
            ++E++AAL   + +     +LI   + RFF P  +    + + V+ IA++V     L  
Sbjct: 77  GKAESLAALAQAMFISGSACFLILNGVDRFFRPHELNAPELGIYVSAIAILVTFGLVLFQ 136

Query: 138 TYTMSK-NSMNIKAAFLHNVSDALASVGVIIAGTLILLYDWY---WTDTVLTLMIAGYVL 193
            Y + K  S  I A  LH  SD L +  +++A    L   W+     D +  + I  Y+L
Sbjct: 137 RYVVRKTGSQAIAADSLHYQSDLLMNAAIMVA----LGLSWWGLGQADAIFAIGIGLYIL 192

Query: 194 WQGFSMLPKTIHLLMEGAPEGVSITDIINVMEQVDDVVSVHHVHV------------WEI 241
           +  F M+   +  L++       +  I  +   V  V+ +H +               E+
Sbjct: 193 FSAFKMVHDAVQTLLDRKLPDEELEQIHAICLSVAGVIGMHQLRTRMSGPVRFIQLHLEL 252

Query: 242 AEHSTALEAHVV 253
            ++ + LEAH +
Sbjct: 253 DDNISLLEAHQI 264



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 118 WTVVVVAGIALIVDVVTALLTYTMSKNSMNIKAAFLHNVSDALASV 163
           WT   VA + L+V V    +T      S+++ A+ + +V D  ASV
Sbjct: 15  WTATAVASLLLVVKVAAWWVT-----GSVSLLASLIDSVLDIAASV 55



 Score = 24.3 bits (51), Expect = 0.004
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 21/104 (20%)

Query: 5   HNHNTEAIGDKRLIAAIGVNTVLTLAQVVGGILSGSLSLIADALHNLSDA---ASLVIAL 61
           H  N   +G      AI V   L L Q      +GS ++ AD+LH  SD    A++++AL
Sbjct: 110 HELNAPELGIYVSAIAILVTFGLVLFQRYVVRKTGSQAIAADSLHYQSDLLMNAAIMVAL 169

Query: 62  IARKIGRKPPDAFKTFGYRRSETIAALINLVTLIIVGLYLIYEA 105
                          +G  +++ I A       I +GLY+++ A
Sbjct: 170 -----------GLSWWGLGQADAIFA-------IGIGLYILFSA 195