Pairwise Alignments

Query, 483 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 48/198 (24%), Positives = 97/198 (48%), Gaps = 4/198 (2%)

Query: 209 VRSPIGGVLNSLDVREGMTVSTGASLARVNGLEKVWLEVAVPEAQVANVAPGQLVNARLP 268
           +++P  GV+   +V  G  +  G  + R+     + L   VP+  ++ ++  Q V+  + 
Sbjct: 166 IKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVD 225

Query: 269 AFAGEVLEGTIQAVLPQANLDSRTVRVRVELPNPQQRLRPGMTAEVT-LSRNVEDVLVIP 327
           A+     +G+I A+ P  ++ S  ++V+ ++PN   +LR GM A    +   +E+ + +P
Sbjct: 226 AYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLP 285

Query: 328 SEAVIRT--GRRALVMLAED-QGRYRPIEVRTGREFDDQTEVLEGLEAGQKVVASGQFLL 384
             A+  T  G    ++  E+ + R +   V+ G   +    +LEG++ G  VV +GQ  L
Sbjct: 286 QTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRL 345

Query: 385 DSEASLRGLTAQGLEEPA 402
            + A +R + +     PA
Sbjct: 346 SNGAKVRIVESDATTPPA 363



 Score = 27.3 bits (59), Expect = 9e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 400 EPATSTEPALHEAEGTIVSLEDGMVGLSHGPFKTLNMPGMTMSFPVA-DQSLLTKLQTGD 458
           EPA S +  L + +  I +  DG   L  G F   N+    +   V   Q+ +T    GD
Sbjct: 240 EPAVSVQSGLIQVQADIPN-SDGK--LRSGMFARANIILPKLENQVTLPQTAITYTLYGD 296

Query: 459 HVRVGARESEEGLVIEHIEKLG 480
           +V + + E+ E  V +H+ K+G
Sbjct: 297 NVYIVSEENGEKRVQQHVVKVG 318