Pairwise Alignments

Query, 613 a.a., copper-resistance protein, CopA family from Pseudomonas stutzeri RCH2

Subject, 642 a.a., CopA family copper resistance protein (RefSeq) from Shewanella sp. ANA-3

 Score =  668 bits (1724), Expect = 0.0
 Identities = 349/629 (55%), Positives = 429/629 (68%), Gaps = 31/629 (4%)

Query: 6   SRRTFVKGLTAAGILGGLGLWRAPVWAVTSPGQPSVLSGTEFDLLIGETPVNITGAARTA 65
           SRR FV G +A   L  +   +  V    S    S LSG  FDL I    VN TG +  A
Sbjct: 21  SRRRFVFGASAMLALMSIPFPKNAVANALSQSL-SQLSGKVFDLTIDYKMVNFTGKSARA 79

Query: 66  MTINGTIPGPLLRWREGDTVTLRVRNKLSEDTSIHWHGMILPANMDGVPGLSFHGIAPDG 125
             +N  +P PLLRW+EG+TVTLRV+N L  D+SIHWHG+ILP  MDGVPG SF GI P  
Sbjct: 80  TVVNQLLPAPLLRWKEGETVTLRVKNNLDHDSSIHWHGIILPTEMDGVPGFSFDGIKPGE 139

Query: 126 MYVYKFQVKQNGTYWYHSHSGLQEQLGVYGPLVIDAKDPEPFSYDRDYVVMLTDWSDEDP 185
            + Y+F V+Q+GTYWYHSHSG QEQ G++G +VID   P+P  YDRDYV+ML+DWSDE P
Sbjct: 140 TFEYQFTVQQSGTYWYHSHSGYQEQTGLFGAIVIDPATPDPVIYDRDYVIMLSDWSDEAP 199

Query: 186 ARILSKLKKQSDYYNFHKRTVGDFINDVSEDGWAATIANRKMWAQMKMSPTDLADVSGYT 245
             I +KLKKQ+DYYN+ +RTV DF +DV+++G A T   R MW   +MS  D++DV+G T
Sbjct: 200 ENIYAKLKKQADYYNYRERTVMDFFSDVNKNGLANTWNARSMWNNARMSDRDISDVTGST 259

Query: 246 YTYLMNGQAPDGNWTGIFKPGEKLRLRFINGSAMSYFDVRIPGLKMTVVAADGQYVNPVS 305
           YTYLMNG  P   W G+F+ GEK+RLRFIN SAM+ FDVRIPGLKM+VVA+DGQ + PVS
Sbjct: 260 YTYLMNGNPPQQGWQGLFEQGEKVRLRFINSSAMTIFDVRIPGLKMSVVASDGQNIQPVS 319

Query: 306 VDEFRIAVAETYDVIVEPATEEAYTIFAQSMDRTGYARGTLAVAEGLSAPVPETDPRPLI 365
           VDEFRI VAETYDV++EP  + AY IFAQS+DRTG+  G L     L AP+P  DPRP++
Sbjct: 320 VDEFRIGVAETYDVVIEPEVDNAYCIFAQSIDRTGFTVGNLTSDASLHAPIPPMDPRPVL 379

Query: 366 TMDDMGMDHGSMGGMAGMDHGG-DMGAMDHSNMSGMNHGDMQGMGDMGAMAGMDHSKM-- 422
              DMGMD   M  M+GMDH   DMGA D   MSGM+H  M   G  G M+GMDHSKM  
Sbjct: 380 GHSDMGMDMSDM-DMSGMDHSKMDMGAGD---MSGMDHSKMAMGG--GDMSGMDHSKMAM 433

Query: 423 --GGMSGMDHS--------------GMAGMSAGMQSHPPSESNNPLVDMQTMSPTHRLND 466
             G MSGMDHS              G+AG  +  +         P VDM+  +P   L+D
Sbjct: 434 GGGDMSGMDHSKMAMDAAKATVSGLGLAGFGSNNEIKHIDTEFGPQVDMRADAPKSGLHD 493

Query: 467 PGIGLRDN----GRRVLTYSDLRSTFPDPDGREPSRTIELHLTGHMEKFSWSFDGIEFSD 522
           PGIGLRD+     R+VLTY D++   P  D R+PSR I+LHLTG+M ++ WS +G++F D
Sbjct: 494 PGIGLRDHQQQFNRKVLTYGDIKGLHPTYDTRQPSREIQLHLTGNMNRYMWSVNGVKFMD 553

Query: 523 SEPLRLKYGERVRITLVNDTMMTHPIHLHGMWSDLEDENGKFMVRKHTIDMPPGSKRSYR 582
           + PL  +YGER+RITLVNDTMMTHP+HLHGMWS+LE  +  F+ RKHT+ + PGSK SY 
Sbjct: 554 AAPLEFEYGERLRITLVNDTMMTHPMHLHGMWSELETGDPDFIPRKHTVLVQPGSKISYL 613

Query: 583 VTADALGRWAYHCHLLLHMEMGMFREVRV 611
           VTADA G+WAYHCHLL HM  GMFR+V V
Sbjct: 614 VTADAKGQWAYHCHLLFHMP-GMFRKVVV 641



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 526 LRLKYGERVRITLVNDTMMTHPIHLHGMWSDLEDENGKFMVRKHTID-MPPGSKRSYRVT 584
           LR K GE V + + N+      IH HG+    E +     V   + D + PG    Y+ T
Sbjct: 91  LRWKEGETVTLRVKNNLDHDSSIHWHGIILPTEMDG----VPGFSFDGIKPGETFEYQFT 146

Query: 585 ADALGRWAYHCHLLLHMEMGMFREVRVD 612
               G + YH H     + G+F  + +D
Sbjct: 147 VQQSGTYWYHSHSGYQEQTGLFGAIVID 174