Pairwise Alignments

Query, 209 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (248), Expect = 3e-26
 Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 23/179 (12%)

Query: 30  PRLLLLNKPFDVLTQFNDADGRA--TLKDFVDVPGVYPAGRLDRDSEGLLLLTNDGQLQA 87
           PR ++++KP  V+    D   +   TL D V++  ++ AGRLD D+ GLLL+T+DGQ   
Sbjct: 59  PRYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSH 118

Query: 88  RIADPKHKLPKTYWVQVEGEVSAEQLQRLRDGVELND--GMTLPAEARQLEEPELWPRNP 145
           R+  PKHK  KTY V +   + A+  ++   G+EL     +TLPA+   + E E+     
Sbjct: 119 RVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVL---- 174

Query: 146 PVRFRKSVPTSWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGPWTLG-GLQPGEWR 203
                         L I EG+  QV+RM AA+G   + L R RIG  TL   L+PGE+R
Sbjct: 175 --------------LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYR 219