Pairwise Alignments

Query, 209 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

Subject, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

 Score =  248 bits (633), Expect = 7e-71
 Identities = 119/209 (56%), Positives = 145/209 (69%), Gaps = 11/209 (5%)

Query: 8   HPPRAAAARTPSRRVAKAP-----------PAEPRLLLLNKPFDVLTQFNDADGRATLKD 56
           HPP  A  ++ + +   A            PAE +++L NKP+D L+QF D DGR TL D
Sbjct: 31  HPPTRANRKSVANKKKNATQTALSPKRPLSPAERKVILFNKPYDTLSQFTDGDGRKTLAD 90

Query: 57  FVDVPGVYPAGRLDRDSEGLLLLTNDGQLQARIADPKHKLPKTYWVQVEGEVSAEQLQRL 116
           ++ +  VY AGRLDRDSEGLL+LTNDG LQAR+  P+ K PKTYWVQVEG      L+ L
Sbjct: 91  YIPIKDVYAAGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEAL 150

Query: 117 RDGVELNDGMTLPAEARQLEEPELWPRNPPVRFRKSVPTSWLELVIREGRNRQVRRMTAA 176
           R GV L DG TLPA+   + EP LWPRNPPVRFR ++PT+WL + + EGRNRQVRRMTA 
Sbjct: 151 RHGVTLKDGPTLPAKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAH 210

Query: 177 VGLPTLRLVRVRIGPWTLGGLQPGEWREV 205
           +G PTLRL+R  +G W LG LQPGEWREV
Sbjct: 211 IGFPTLRLIRYSMGDWNLGDLQPGEWREV 239