Pairwise Alignments

Query, 688 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  131 bits (329), Expect = 1e-34
 Identities = 118/465 (25%), Positives = 201/465 (43%), Gaps = 13/465 (2%)

Query: 226 GETLKTRMHFSPAAYDGEPCIQVVIRAENDSAELQKLREISSQ---DPVTGLLNRNSFLE 282
           GET+  R +  P    G     ++I  E+ +   Q   +++ Q   D +T  LNRN F  
Sbjct: 299 GETVWVRENIRPLVETGT----LLIVGEDITETRQLADQLAYQARYDLLTHTLNRNQFEL 354

Query: 283 VMDAAVERAVNAGQTASLAYIRIDRFAALQAEIGLTDSDQLLNQLAILLRGHFPAETQLA 342
            +  A++   +  +T ++ Y+ +D+   L    G    D  +   A +L    P +  LA
Sbjct: 355 ELAKALKETDSQLRTHAMLYLDLDQLKVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLA 414

Query: 343 RFADDVFTVLQPGVIPQLAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGLDEKTAKA 402
           R   D F+VL      + A    + ++  +              T SIG+  +D      
Sbjct: 415 RMGGDEFSVLLRDCTERDAVLVAQSIIHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSP 474

Query: 403 QDAIERAHR-CADELSDG-NALKIYDPADE-LAAAANRGDIAAMLRQALENNSFRLLFQP 459
           Q    +A   C     +G N   +Y   DE L       +   ++  AL N    L  Q 
Sbjct: 475 QMVHAQADTACHAAKEEGRNRFNLYRQDDEDLRRRQLEMESVNLVHDALANERIELFAQR 534

Query: 460 IISL-RGDSFEHYEVLLRLLDPQGAEVPPNEFLSTAADVGLSAKIDRWVILNSIKLL-AE 517
           I+ L + D   H+EVL+R+ +  G  V P  F+  +    L+ ++DR ++  +   L A 
Sbjct: 535 IVPLNQPDVLLHFEVLVRIKNAAGEYVSPGIFVPASERYNLAHRLDRKIVEQTFNWLEAR 594

Query: 518 HRAKGHRTRLFLHLCAASLQDPSLLPWLGVVLKASRLPGDSLVFEFGEADAVAYLKPAKA 577
            +      R+ ++L   S+ +P  + +L   L+ SR+P   + FE  E  A+  L  A  
Sbjct: 595 PQVLDKLGRVSINLSGNSIGNPDFVAFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIK 654

Query: 578 LAQGLRGLGCHIGLAQFGCVLNPFNTLKHLDAGFIKVDGSYTQDLTRQENQEALKTLLAD 637
           +   L+ LGC + L  FG  L+ F  L+ L    +K+DG +  D+ + E    +   + +
Sbjct: 655 VLSQLKSLGCVLALDDFGSGLSSFGYLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHE 714

Query: 638 LHEQQ-KQSIVPFVESATVLATLWQAGVSYIQGHYLQGPSQSMDY 681
           L +Q  K ++  FVE+  +L  L Q GV Y QG+    P    D+
Sbjct: 715 LTKQMGKSTVAEFVENQQILEALQQIGVDYAQGYLFSRPQPIADW 759