Pairwise Alignments

Query, 750 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Pseudomonas stutzeri RCH2

Subject, 887 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Pseudomonas fluorescens FW300-N2E2

 Score =  416 bits (1068), Expect = e-120
 Identities = 282/780 (36%), Positives = 425/780 (54%), Gaps = 82/780 (10%)

Query: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLNADAKHKKSARTVG 75
           ++ D  +Q+YL+Y+M VI+ RALP   DGLKPV RR+++AMSELG + +  +KKSAR VG
Sbjct: 12  NIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE R+++ 
Sbjct: 72  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKL 130

Query: 136 SEVLLSELGQGTVEWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPPHNLREV 195
           +  LL++L + TV+WVPN+DGT   PA +P R+PNLL+NG++GIAVGMAT++PPHNL EV
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 196 AAACVRLLDEPSASVEQLCEHVRGPDFPTEAEIITPRADLLKIYETGRGSVRMRAVYRVE 255
              C+ L+D P  +V++L +++ GPDFPT A II  RA +++ Y TGRG + MRA   VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPT-AAIINGRAGIIEAYRTGRGRIYMRARSTVE 249

Query: 256 DGD-------IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRIVIIP 308
           D D       IV+T LP+Q++ ++++E+IA  ++ KKL  + +LRDESD +   R+VI  
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDG-MRVVIEL 308

Query: 309 RSNRVDVEGLMQHLFATTDLESSYRVNANVIGLDGRPQVKNLRTLLSEWLTYRIGTVRRR 368
           R   V  E ++ +L+A T L+S + +N  V  +DGRP++ NL+ LL  ++ +R   V RR
Sbjct: 309 RRGEVP-EVILNNLYAQTQLQSVFGINI-VALIDGRPRILNLKDLLEAFVRHRREVVTRR 366

Query: 369 LQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMA---------------- 412
             F L K  +R H+LEG  VA  N+D VI +I+    P     A                
Sbjct: 367 TVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVE 426

Query: 413 ---------------------RFELSELQADYILDTRLRQLARLEEMKIRGEQDELAKER 451
                                ++ LS  QA  IL+ RL +L  LE  K+  E  E+  + 
Sbjct: 427 RAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQI 486

Query: 452 EKLLALLGSEAKLKKLVRKELLADAETYGDARRSPIVERAEARA-LSENELLPSEPVTVV 510
            +L+ +L S  +L +++R+EL      YGD RR+ I+   +AR  L+  +++P E   V 
Sbjct: 487 GELIRILNSATRLMEVIREELEVIRAEYGDVRRTEIL---DARLDLTLGDMIPEEERVVT 543

Query: 511 ISEKGWARCAK----------GHDIDATGLSYKAGDGFKTAAAGRSNQYAVFIDSTGRSY 560
           IS  G+A+             G    ATG+  K  D         S+   +   S G+ Y
Sbjct: 544 ISHGGYAKTQPLAAYQAQRRGGKGKSATGV--KDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 561 SLAAHSLPSA--RGQGEPLTGRLAPPPGASFECVLLPED---DALYVIASDAGYGFVVKG 615
            L  + +P A    +G PL   L P     +   +LP +   +  Y+  + A  G V K 
Sbjct: 602 WLKTYEIPEASRAARGRPLV-NLLPLDDGEYITTMLPVEEYTEGHYIFMATAN-GTVKKT 659

Query: 616 --EDLQAKNKAGKALLSLPKGAKVVAPRPLASRDDDWLAAVTTEGRLLVFPVRDLPQLGK 673
             E    +   G   L L +G  +++        +  L   +  G++  F   D+    +
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVML--FSDGGKVTRFKESDV----R 713

Query: 674 GKGNKIIGIPGERVASREEYLIDLALLPAGATLVLQAGKRTLSLKAEDLEHYKGERGRRG 733
             G    G+ G R+   ++ LI + L+P   + +L A  R    +    E  + +RG +G
Sbjct: 714 AMGRTARGVRGMRLPEGQK-LISM-LIPEEGSQILTASARGYGKRTAISEFPEYKRGGQG 771



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 584 PPGASFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGK---ALLSLPKGAKVVAP 640
           P G     +L+PE+ +  + AS  GYG      +     + G+   A++S  +  ++V  
Sbjct: 728 PEGQKLISMLIPEEGSQILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVG- 786

Query: 641 RPLASRDDDWLAAVTTEGRLLVFPVRDLPQLGK 673
             +   D + +  ++ +G L+   V ++  LG+
Sbjct: 787 -AVQVLDGEEIMLISDQGTLVRTRVAEVSSLGR 818