Pairwise Alignments

Query, 750 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Pseudomonas stutzeri RCH2

Subject, 894 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  394 bits (1011), Expect = e-113
 Identities = 247/673 (36%), Positives = 384/673 (57%), Gaps = 68/673 (10%)

Query: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLNADAKHKKSARTVG 75
           ++ D    +YL+Y+M VI+ RALP + DGLKPV RR+++AM+ LG + +  +KKSAR VG
Sbjct: 12  NIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGDSA Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ 
Sbjct: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD-SAAAMRYTEVRMSKI 130

Query: 136 SEVLLSELGQGTVEWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPPHNLREV 195
           +  LL++L + TV++VPN+DGT   PA LP ++PNLL+NG +GIAVGMAT++PPHNL EV
Sbjct: 131 AHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNLGEV 190

Query: 196 AAACVRLLDEPSASVEQLCEHVRGPDFPTEAEIITPRADLLKIYETGRGSVRMRAVYRVE 255
              C+  +D  + ++++L +++ GPDFPT A +I+ R  ++  Y+TGRG V MR+   +E
Sbjct: 191 IDGCLAYIDNEAITIDELMDYIPGPDFPTAA-LISGRKGIIDAYKTGRGKVYMRSKAEIE 249

Query: 256 DGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRIVIIPRS 310
                   I+V+ +P+QV+ ++++E+IA  ++ KK+  ++ LRDESD +   RIVI  + 
Sbjct: 250 TDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG-MRIVIECKR 308

Query: 311 NRVDVEGLMQHLFATTDLESSYRVNANVIGLD-GRPQVKNLRTLLSEWLTYRIGTVRRRL 369
           + V  E ++ +L+A T L++++ +N  ++ LD G+P++ NL+ +L  ++ +R   V RR 
Sbjct: 309 DAVG-EVVLNNLYANTQLQTTFGIN--MVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 370 QFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIR---TEDQPKPVLMAR------------- 413
            F L K  +R H+LEGL +A  N+DE+I +IR   T  + K  L+AR             
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 414 ---------------------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKERE 452
                                + L+E QA  ILD RL +L  LE  KI  E  +L +E  
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 453 KLLALLGSEAKLKKLVRKELLADAETYGDARRSPIVERAEARALSENELLPSEPVTVVIS 512
            L+ +L S  +L +++R+EL A    + DARR+ I   A    +   EL+  E V V +S
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEIT--AATHDIDMEELIAREDVVVTLS 543

Query: 513 EKGWARCAKGHDIDA--------TGLSYKAGDGFKTAAAGRSNQYAVFIDSTGRSYSLAA 564
            +G+ +     D +A        +    K  D  +      ++   +   + G++Y +  
Sbjct: 544 HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 603

Query: 565 HSLP--SARGQGEPLTGRLAPPPGASFECVL----LPEDDALYVIASDAGYGFVVKGEDL 618
           + LP  S   +G+P+   L          +L      ED  +++   D   G V K    
Sbjct: 604 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGD---GTVKKTSLD 660

Query: 619 QAKNKAGKALLSL 631
           Q  N     L++L
Sbjct: 661 QFANVRANGLIAL 673