Pairwise Alignments

Query, 750 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Pseudomonas stutzeri RCH2

Subject, 901 a.a., DNA gyrase subunit A (RefSeq) from Shewanella amazonensis SB2B

 Score =  392 bits (1006), Expect = e-113
 Identities = 243/630 (38%), Positives = 362/630 (57%), Gaps = 59/630 (9%)

Query: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLNADAKHKKSARTVG 75
           ++ D  + +YL+Y+M VI+ RALP + DGLKPV RR+++AM+EL  + +  +KKSAR VG
Sbjct: 12  NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARVVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGDSA Y+ +V MAQPFS RYTLVDGQGN+G+ D   + AAMRYTE R+ + 
Sbjct: 72  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAA-AAMRYTEIRMEKL 130

Query: 136 SEVLLSELGQGTVEWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPPHNLREV 195
           +  LL++L + TV++VPN+DGT   PA LP ++PNLL+NG +GIAVGMAT++PPHNL EV
Sbjct: 131 AHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNLTEV 190

Query: 196 AAACVRLLDEPSASVEQLCEHVRGPDFPTEAEIITPRADLLKIYETGRGSVRMRAVYRVE 255
              C+ L++EP  S+EQL E++ GPDFPT A II  +  + + Y TGRG   MRA   VE
Sbjct: 191 VKGCLALIEEPELSIEQLMEYIPGPDFPT-AAIINGKKGIEEAYRTGRGKAIMRARAEVE 249

Query: 256 DGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRIVIIPRS 310
             D     I+VT +P+QV+ ++++E+IA  ++ KK+  ++ LRDESD +   RIVI  + 
Sbjct: 250 IEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDG-MRIVIEIKR 308

Query: 311 NRVDVEGLMQHLFATTDLESSYRVNANVIGLDGRPQVKNLRTLLSEWLTYRIGTVRRRLQ 370
             V  E ++ +L+A T ++SS+ +N   +  +G+P++ NL+ +L  ++ +R   V RR  
Sbjct: 309 GEVG-EVVLNNLYAQTQMQSSFGINMVALA-NGQPKLFNLKEMLEAFILHRREVVTRRTV 366

Query: 371 FRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQP---KPVLMAR-------------- 413
           + L K   R H+LE L VA  N+D +I +I+    P   K  L+A+              
Sbjct: 367 YELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEKA 426

Query: 414 --------------------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKEREK 453
                               + ++E QA  ILD RL +L  LE  KI  E +EL +    
Sbjct: 427 GDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIAG 486

Query: 454 LLALLGSEAKLKKLVRKELLADAETYGDARRSPIVERAEARALSENELLPSEPVTVVISE 513
           LL +L S  +L +++++EL    E +GD RR+ I   A A  +S  +L+  E V V +S 
Sbjct: 487 LLHILRSPERLMEVIKEELELILEQFGDNRRTEI--NASAVDISLEDLINEEDVVVTLSH 544

Query: 514 KGWARCAKGHDIDA--------TGLSYKAGDGFKTAAAGRSNQYAVFIDSTGRSYSLAAH 565
            G+A+     D  A             K  D  +      ++   +     G+ Y L  +
Sbjct: 545 LGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVY 604

Query: 566 SLP--SARGQGEPLTGRLAPPPGASFECVL 593
            LP  S + +G P+   L    G     +L
Sbjct: 605 QLPLASRQARGRPIVNLLPLQEGERITAIL 634



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 572 GQGEPLTGRLAPPPGASFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSL 631
           G+G      +A   G     +++P+DD+  +  +  G+G   +  +  AK++A K ++S+
Sbjct: 739 GRGATGVRGIALEEGQRVVSLIVPKDDSAILTVTANGFGKRTELAEYPAKSRATKGVVSI 798

Query: 632 ---PKGAKVVAPRPLASRDDDWLAAVTTEGRLLVFPVRDLPQLGK 673
               +   VV    +   D+  +  ++ +G L+  P   +  +G+
Sbjct: 799 KVTERNGPVVGAVQVGENDE--IMLISDKGTLVRTPAIGVSIIGR 841