Pairwise Alignments

Query, 605 a.a., lipid A export permease/ATP-binding protein MsbA from Pseudomonas stutzeri RCH2

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  488 bits (1256), Expect = e-142
 Identities = 260/598 (43%), Positives = 386/598 (64%), Gaps = 21/598 (3%)

Query: 1   MANSTQQSSMKVYLRLLRYVVPYWGLFTISLVGFLIFASTQPMLGYMLKFFVD-GLNNPE 59
           M+  + +S+ + + RL  Y+  Y     +S +  +I A+    +  +LK  +D G  N E
Sbjct: 1   MSLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE 60

Query: 60  SSFFGQVPYLQEHSWLAELKLLQAVPLLIVFIALMQGIGSFLGNFFLAKVSLGLVHDLRL 119
           S+F                  L+ +P +I+ +  ++G+  F  ++ L+ VS  +V  +R 
Sbjct: 61  SNF------------------LRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRR 102

Query: 120 ALFNNMLTLPNRYFDSHNSGHLISRITYNVTMVTGAATDAIKVVVREGMTVIFLFATLLW 179
            LFN+ + +P R+FD  ++G L+SRITY+   V GA + A+  +VREG ++I L   + W
Sbjct: 103 RLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW 162

Query: 180 MNWKLTLVMLAILPVIGFMVSSASKKFRKQSKKIQLAMGDVTHVASETIQGYRVVRSFGG 239
            +W+L+LV++ + PV+ F +S  SK+FRK S+ +Q AMG VT  A + ++G++VV S+GG
Sbjct: 163 NSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGG 222

Query: 240 EPYERNRFLTASSENTAKQLRMVKTNAVYTPSLQLVIYSAMAVLMFLVLL--LRGDASAG 297
           +  ER RF   S+    + +++V   ++  P +Q++   A+  ++FL  +  +R + + G
Sbjct: 223 QEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG 282

Query: 298 DLVAYITLAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDEEPEIDQGTLEREAVSGHL 357
                 +    L +P++ L+ V+S  Q+G+A  +++F  +D E E D G  E E V+G +
Sbjct: 283 TFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEV 342

Query: 358 EVRNLDFVYPGTDKQVLRDISFTIEPGQMVALVGRSGSGKSTLANLIPRFYHHEAGQILL 417
           +V+++ F Y G +K  L  +SF+I  G+ VALVGRSGSGKST+ANL  RFY  ++G I L
Sbjct: 343 DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402

Query: 418 DGADVESYTLRNLRRHIALVTQQVTLFNDTVANNIAYGDLAGAPLDDIRRAARDAYADEF 477
           DG DV  Y L NLRRH ALV+Q V LFNDT+ANNIAY        + I +AAR A+A EF
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF 462

Query: 478 IEQMPEGYQTLVGENGVLLSGGQRQRLAIARALLKNSPVLILDEATSALDTESERHIQGA 537
           IE MP+G  T++GENG  LSGGQRQR+AIARALL+++PVLILDEATSALDTESER IQ A
Sbjct: 463 IENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522

Query: 538 LDHVMQGRTTLVIAHRLSTIEKADQILVMEQGRIVERGTHAELLAVNGAYARLHATQF 595
           LD + + +T LVIAHRLSTIE+AD+ILV+++G I+ERG HA+LLA +GAYA+LH  QF
Sbjct: 523 LDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580