Pairwise Alignments

Query, 890 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  358 bits (920), Expect = e-102
 Identities = 201/543 (37%), Positives = 315/543 (58%), Gaps = 10/543 (1%)

Query: 338  LSLFQRAVEQSASAFILVDRDGRVEYVNPAFTSISQFSAAEVRGHRLTDLKALENLSELL 397
            + L  +A   ++   +++D D RV   N A  SI   SA ++       L  + +  +  
Sbjct: 932  VKLLAQAFANTSEGVLILDADERVRVSNKAAQSILGMSADDLIDRYFAQL--VHSSEDRS 989

Query: 398  FDTSSVLAHSNSWQGE--FRSRRKNLEPYWGQLSISKVFNDEGVLTHYIGIYEDITRSKL 455
             + + +L    +W GE  F+     + P W  L++S + +D G ++HY+ ++ DIT  K 
Sbjct: 990  DEINILLEQGITWTGEHEFQCAEGLICPVW--LNLSTMKDDRGNISHYVAVFSDITERKQ 1047

Query: 456  AHQHIERLAYTDNLTNLGNRPYFIRSLEERF--AAGAEPRLCLLLVDIDNFKRINDSLGH 513
                + RLA  D LT L NR  F   L +    A   E +L L+ +D+D FK +NDS GH
Sbjct: 1048 TEADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTEDKLALIFLDLDRFKNVNDSYGH 1107

Query: 514  QTGDKLLTSLARRLRNGLSQQSVLARFASNEFALLFDDM-ELDEGLRLADQVLRVLDKPL 572
              GD LL   A RL++ +S+   L RF  +EF +L  DM ++DE   L + ++R ++KP 
Sbjct: 1108 SMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVNHLCEALIRQIEKPF 1167

Query: 573  FVDKQLISVSASLGLACSPQHGRDPETLMKHAGQALHKAKANGKNQVQIFTEALHAEANY 632
             +  +   +S S+G++  P   + PE L+K+A QA++ AK  G+   Q F+   +AEA Y
Sbjct: 1168 ELYGREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGNFQYFSAERNAEALY 1227

Query: 633  KLFVENNLRRALTQNELEVFYQPKL-CLRSGQLQGLEALLRWNHPEKGMIRPDQFISVAE 691
             L +E  LR+A+ + E E+++QP++  L+  ++ G+EALLRW+HP++G IRPD FI VAE
Sbjct: 1228 HLKLEAELRKAMDRQEFELYFQPQIDILKDDKVVGMEALLRWHHPKEGYIRPDIFIRVAE 1287

Query: 692  ETGLIIPIGKWVLREACRMGVRLSALGHGKPQIAINLSPKQFSDPDLLGSIASILLEEQL 751
              GLII I +WV+++AC  G + +     + ++++N+S   F  PD +  +   L E  +
Sbjct: 1288 SCGLIIEIDRWVIKQACLQGAKWAEHFGDELKLSVNVSAVHFRQPDFIQDVQQALKESGM 1347

Query: 752  SPGQLELELTESLLLDATEETRQQLIGLKALGLTLAMDDFGTGYSSLSYLKKFPIDVIKI 811
                L LE+TE +L+      +  L  L+ +G+ +A+DDFGTGYSSL+YL+ F +  +KI
Sbjct: 1348 PAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAIDDFGTGYSSLAYLRSFDVSTLKI 1407

Query: 812  DRSFIKDIPDNQDDMEITSAVIAMARKLHLKVVAEGIETAEQLKFLRHHRCDIGQGYLFD 871
            DRSF+ DI  N+ D  I S++I +AR L LKVVAEG+ET EQL+ +    C I QGY F 
Sbjct: 1408 DRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGVETQEQLEQVFSRGCYIIQGYYFA 1467

Query: 872  KPI 874
            KP+
Sbjct: 1468 KPM 1470