Pairwise Alignments

Query, 328 a.a., ATPases of the AAA+ class from Pseudomonas stutzeri RCH2

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  110 bits (275), Expect = 1e-28
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 15/225 (6%)

Query: 97  SSSAALEEILEENRRA--------DVLRSYGMKPAGKVIFFGPPGCGKTLAAEVVAFELD 148
           S    LE+I ++ + A        ++    G++P   V+ FGPPG GKTL A+ VA E +
Sbjct: 507 SDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESE 566

Query: 149 RPLAIVRLDALVSSFLGETAANLRKVFDFIAQ-HPFVVLFDEFDAIGKERG-DSGDHGEL 206
                V+   + S ++GE+   +R++F    Q  P V+ FDE D++  +RG D G  G  
Sbjct: 567 ANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSSGVT 626

Query: 207 RRVVNAVLQMMDSYEGRS--LILAATNHEKILDTAIWR--RFDESIEFPLPDEKQLKDIL 262
            +VVN +L  +D  E     +I+AATN   ILD A+ R  R D  +  P+P+E    +I 
Sbjct: 627 EKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEIF 686

Query: 263 SLKLRGIRRQFEIDDKEVLTEFKGKSGADVERVIRRAAKRMILRE 307
            +  +G+    +++ +++  E KG +GAD+E V R AA  + LRE
Sbjct: 687 KVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAA-MIALRE 730



 Score = 94.7 bits (234), Expect = 7e-24
 Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%)

Query: 110 RRADVLRSYGMKPAGKVIFFGPPGCGKTLAAEVVAFELDRPLAIVRLDALVSSFLGETAA 169
           R  ++    G++P   V+  GPPG GKTL A+ VA E       +    ++S ++GET  
Sbjct: 198 RYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEE 257

Query: 170 NLRKVFDFIAQH-PFVVLFDEFDAIGKERGDSGDHGELRRVVNAVLQMMDSYE--GRSLI 226
           NLRK+F+   ++ P ++  DE DA+  +R ++    E RR+V  +L +MD  E  G+ +I
Sbjct: 258 NLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVE-RRMVAQLLTLMDGLESRGQLVI 316

Query: 227 LAATNHEKILDTAIWR--RFDESIEFPLPDEKQLKDILSLKLRGIRRQFEIDDKEVLT 282
           LAATN    +D A+ R  R D  I   +PD     +IL +  R +  Q + +  +V++
Sbjct: 317 LAATNRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTRNMPLQPDYEKSDVIS 374